Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00313 ATGGATATCATGTCAATAGGAGAAAGTCATGGTGGTAATGGCTTTCAAATTTATGGTTGTGATGTTATGAACCCTGCTTTCACATCCACAGACACAAATGAATTCTTATGTGCCCACTTCCTTCATCAACAACAACAACAAGAAGCAAGGAACAGTGATGATTGTGGTTTTTCTGAGGAGGCTTTTAAGTGGACAAACGTCAACCACAACCTTAAATTGTGCCTGGAAGACATGCAAGTTTCATGCAAGAACACAAAAGTGGTGGGAAGGAGGAGGAAGAAACAATCTTCTGTGTCTTGGATCAAAGGACAATGGAACAAAGAAGAGGACAGAAAACTAATAAGGCTGGTGAAACAACATGGTGATAAAAAATGGGCTGAAATAGCTGAGAATTTGGAAGGAAGAGTTGGAAAACAGTGTCGAGAAAGATGGAATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGACTGAAGAAGAAGAGAGCATACTAGTAGAGATGCATGCGACCCTTGGAAATCGTTGGTGCGAGATGGCAAAACGCCTTGCAGGAAGATCAGAGAATGCCATAAAGAACCACTGGAATGCCACCAAAAGGAGACTGAATTCAAAGAGAAAGCACAAGAAAACAAAAAATGGAAAACCACATTCCTCCATACTTGAAGACTACATCAGAAGCAAGACCCTGATCAGCACAAACCCTACACCTGTCATCATCACTGCCCCAACACCCTCACAGGACAATGGAGCTAACCCTTTAAACCACGTGTTCCATGAACCTTTTGGTAACGATTTAGTCTTCATGCAACAAATTTGCACGGAGAATGTTGAAGCCTCTAAGCTCTCCAAGATGTCTCCAACCACATATTTGGATTGCTGGAACATGAATGTTGATGATATGGATGAGAGTGAGTTTTTGTATTCTCAGCAATACCCAGATAATATGCAGTTGAATGATAGTCTCTTCCCTAGGGAGACTCATCCTCCAGGTAACTACCTTCCTTCGGATCTATATGTATCTCCCTTGTTCAACGTAGCATTTGGATATGGAAATCAGAATCTTAGCATAGATTTTCGGCATCAAGGTTGCTCACAAGTAAAAGGAGAGGAGATTTGGTAG 1122 0.4118 MDIMSIGESHGGNGFQIYGCDVMNPAFTSTDTNEFLCAHFLHQQQQQEARNSDDCGFSEEAFKWTNVNHNLKLCLEDMQVSCKNTKVVGRRRKKQSSVSWIKGQWNKEEDRKLIRLVKQHGDKKWAEIAENLEGRVGKQCRERWNNHLRPDIKKDSWTEEEESILVEMHATLGNRWCEMAKRLAGRSENAIKNHWNATKRRLNSKRKHKKTKNGKPHSSILEDYIRSKTLISTNPTPVIITAPTPSQDNGANPLNHVFHEPFGNDLVFMQQICTENVEASKLSKMSPTTYLDCWNMNVDDMDESEFLYSQQYPDNMQLNDSLFPRETHPPGNYLPSDLYVSPLFNVAFGYGNQNLSIDFRHQGCSQVKGEEIW 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00313 373 SMART sant 153 201 IPR001005 -
Phco3g00313 373 SMART sant 101 150 IPR001005 -
Phco3g00313 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 203 IPR017930 -
Phco3g00313 373 Gene3D - 101 153 - -
Phco3g00313 373 PANTHER MYB PROTEIN-RELATED 92 216 - -
Phco3g00313 373 ProSiteProfiles Myb-like domain profile. 102 148 IPR001005 -
Phco3g00313 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 152 IPR017930 -
Phco3g00313 373 FunFam Transcriptional activator Myb isoform A 101 154 - -
Phco3g00313 373 SUPERFAMILY Homeodomain-like 99 195 IPR009057 -
Phco3g00313 373 CDD SANT 156 199 IPR001005 -
Phco3g00313 373 CDD SANT 105 148 IPR001005 -
Phco3g00313 373 ProSiteProfiles Myb-like domain profile. 149 199 IPR001005 -
Phco3g00313 373 Pfam Myb-like DNA-binding domain 105 163 - -
Phco3g00313 373 Gene3D - 156 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00313 Phco-Chr3 2211299 2215384 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g00313 Myb_DNA-bind_6 2.4e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01760 11 13870711 13873443 Phco3g00313 3 2211299 2215384 PCT