Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00310 ATGAAGTGGGAAACTGTAACCCTTTCTCCTACACCTTGTTCTCCAAACTCCAACACCAATTGGTTGGTGGAAAATAATAGGAGCACAAAATGGACCCCTGAAGAGAACAAACTCTTTGAAAATGCTCTTGCAGTACATGATAAAGACACTCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCTGGAAAGACAGTAGTTGATGTGATCAAGCAGTACAAGGAACTGGAAGTTGATGTTAGTAATATAGAAGCTGGGTTGATCCCAGTTCCTGGCTATAGCACTGCTACCTCACCCTTCACCTTAGATTGGGTGAACACTCCTGGTTATGATGGGTTCAAAGGAAGTGGAAAGAGATCATCCTCAGTGAGACCTCATGAGCAGGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGAGGAACATAAATTGTTTCTACTGGGTCTGAAGAAGTACGGGAAAGGTGATTGGAGAAATATTTCTCGCAATTATGTGATCACTAGAACCCCAACACAGGTGGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGGGCTAGCATACATGACATAACAACAGTGAATCTCACAGAAACCACCACAACTTCTTCAGAAGACACCAATAGATCCACCTCACCACATGTGCTCTCACAGCAGCAGCCAAATTCTACTCCAACTACACCCAGAACTCATTTTCAGTGGAGTAACCAGTCCAGCACAGGAGTAGCTATGACTTTCAACCCTGCTCATGAAAGAGTCTTCATGTCTCCTTATGGTGCTAACACCTTTGGGGTTAAAATGGAAGGACGGAATCTGCATGATGAGTCTTCTTACTTGGGACCTCAGACACAGAACATGGTTTTCCAAATGCAAAAGTCCTCACAACACTAG 912 0.4419 MKWETVTLSPTPCSPNSNTNWLVENNRSTKWTPEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVVDVIKQYKELEVDVSNIEAGLIPVPGYSTATSPFTLDWVNTPGYDGFKGSGKRSSSVRPHEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTTTSSEDTNRSTSPHVLSQQQPNSTPTTPRTHFQWSNQSSTGVAMTFNPAHERVFMSPYGANTFGVKMEGRNLHDESSYLGPQTQNMVFQMQKSSQH 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00310 303 Gene3D - 134 184 - -
Phco3g00310 303 ProSiteProfiles SANT domain profile. 26 81 IPR017884 -
Phco3g00310 303 CDD SANT 30 76 IPR001005 -
Phco3g00310 303 SUPERFAMILY Homeodomain-like 29 81 IPR009057 -
Phco3g00310 303 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Phco3g00310 303 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Phco3g00310 303 FunFam transcription factor MYB1R1 134 185 - -
Phco3g00310 303 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Phco3g00310 303 CDD SANT 135 180 IPR001005 -
Phco3g00310 303 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 253 IPR043363 -
Phco3g00310 303 MobiDBLite consensus disorder prediction 120 134 - -
Phco3g00310 303 MobiDBLite consensus disorder prediction 206 243 - -
Phco3g00310 303 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Phco3g00310 303 MobiDBLite consensus disorder prediction 114 134 - -
Phco3g00310 303 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Phco3g00310 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Phco3g00310 303 SMART sant 27 79 IPR001005 -
Phco3g00310 303 SMART sant 132 182 IPR001005 -
Phco3g00310 303 FunFam Transcription factor SRM1 23 90 - -
Phco3g00310 303 Gene3D - 23 90 - -
Phco3g00310 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Phco3g00310 303 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00310 Phco-Chr3 2194287 2195542 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g00310 Myb_DNA-binding 1.6e-12 CL0123