Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00302 ATGAAGAAAACACCATCTCCCAAATTTCATCAATCTAGCCAAAGGAAACAGAATGCTAATCTCCAATATCTTGCCAGAGTCAATGATGCAGAGAAGCACAATCCTAAGACCAGTTCTGCACTGAAATCTTTCAAGAGTGCAGTGAAGAAATGTGCACAAATTTTTTCATTGTTTCTCCATGGCAAAAGAAAATCAGCCCCTTATGTTGTTGGAAATGATGACAGAAAAAATACATCTAAAGTCAGGGGTGTGGCATCATCATCAACTGATTTATCTTCGGAGAGTAACACCAAGAATTCCTCAAAATGGAAGTTTTCCTATTCCTACGCCTCATCTAGCACTGCAAGTGGACAACTTGGAATTGGCAACTTCTCCTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCTCCAAATAATGAAATTGGACAAGGTGGCTTTGGAACTGTCTACAAGGGAAAGCTAAATGATGGATCCATAGTTGCCGTAAAGCGTGCGAAGAAGGAAGTAATACACAATCACTTACATGAGTTCAAGAATGAAATATACACCTTGTCTCAAATTGAGCATAGGAATCTTGTGAGGTTGTATGGATATTTGGAACATGGAAATGAGAAGATCATTGTTGTTGAATATGTTGGTAATGGTAACCTTCGAGAACACCTTGATGGGATTCGGGGAGAAGGATTAGAAATTGGGGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCTTAATCACTGAGAACCTAAAGGCCAAAGTGGCAGATTTTGGTTTTGCACGGTTGTCTGATGATCCTACAGCAACTCATATTTCAACTCAAGTCAAAGGAACAGCTGGATACATGGATCCTGAGTATCTTAGAACATATCAACTCACTGAAAAAAGTGATGTTTATTCCTTTGGTGTATTGCTTGTTGAAATGGTCACAGGAAGACATCCAATAGAACCAAAGAGACCCCTTGATGAAAGAGTGACAATCAGATGGGCAATGAAGATGCTGAAACAAGGGGATGCTGTATTTGCCATGGACCCTAGGCTGAGAAGAAATCCAGCCTCCATCAAGGCAGTAAAACAGGTTCTCAAGCTAGCTTTTCAATGCGTTGCGCCTTTGAAACAATCACGTCCACCTATGAAGAATTGTGCAGAGGTTCTGTGGGAAATCCGAAAAAGTTTTAGAGATGAAACCAATTCTGATCATCCTTCTCTTCCTTCTCACCATTCTGCAGATTTTCCTAAACGGGAAAAGAATAATCATACAATGTTTGGCATTGAAGATGATGACAGCTATAAATTTGTCTCTGTACCCAATCATATTCATTCATAA 1395 0.3907 MKKTPSPKFHQSSQRKQNANLQYLARVNDAEKHNPKTSSALKSFKSAVKKCAQIFSLFLHGKRKSAPYVVGNDDRKNTSKVRGVASSSTDLSSESNTKNSSKWKFSYSYASSSTASGQLGIGNFSFEEIYKSTAKFSPNNEIGQGGFGTVYKGKLNDGSIVAVKRAKKEVIHNHLHEFKNEIYTLSQIEHRNLVRLYGYLEHGNEKIIVVEYVGNGNLREHLDGIRGEGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILITENLKAKVADFGFARLSDDPTATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMVTGRHPIEPKRPLDERVTIRWAMKMLKQGDAVFAMDPRLRRNPASIKAVKQVLKLAFQCVAPLKQSRPPMKNCAEVLWEIRKSFRDETNSDHPSLPSHHSADFPKREKNNHTMFGIEDDDSYKFVSVPNHIHS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00302 464 CDD STKc_IRAK 142 411 - -
Phco3g00302 464 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 110 428 - -
Phco3g00302 464 Gene3D Phosphorylase Kinase; domain 1 94 212 - -
Phco3g00302 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Phco3g00302 464 Pfam Protein tyrosine and serine/threonine kinase 139 408 IPR001245 GO:0004672|GO:0006468
Phco3g00302 464 SUPERFAMILY Protein kinase-like (PK-like) 117 411 IPR011009 -
Phco3g00302 464 MobiDBLite consensus disorder prediction 81 99 - -
Phco3g00302 464 MobiDBLite consensus disorder prediction 418 438 - -
Phco3g00302 464 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 100 212 - -
Phco3g00302 464 MobiDBLite consensus disorder prediction 68 99 - -
Phco3g00302 464 ProSiteProfiles Protein kinase domain profile. 136 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00302 464 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 213 422 - -
Phco3g00302 464 Gene3D Transferase(Phosphotransferase) domain 1 213 431 - -
Phco3g00302 464 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Phco3g00302 464 SMART serkin_6 136 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00302 Phco-Chr3 2140916 2145570 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Phco3g00302 PK_Tyr_Ser-Thr 4.5e-52 CL0016