Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00297 ATGGAGTCCAACTTGGGATATTCCAGGATGTTCTTTTTACTCCTGCTTGGTTCAACTTCATTGATTTTCCTACACTTGGCTTCTGCGGCCACTCCCAAGCTCAACACTCAAGAGGTGAAGGCACTGAAGGAGATAGGGAGCAAGATTGGGAAGAAGGATTGGGACTTTGGAGTGGATCCTTGCAGTGGAAAAGGGAGTTGGAATGCTTCTGATGATAGGAAAGGCTTTGAGAGCTCTGTGATGTGTGATTGTTCCTTCAATAACAGTACTTCTTGCCATGTTGTAAGCATATTCTTGAAGGGTCAGAATCTGTCTGGTAGTCTTTCACCGATGTTCTCCAAGCTTCAGTATCTCACACATTTGGACCTCAGTCGTAACATCATCACTGGTTCTATACCTCCACAGTGGAGTACCATGCGCTTGGTTGAGATCTCTTTAATGGGAAACAAATTATCAGGTCCATTCCCCAAAGTTCTCACCAATATCACAACCCTCAGAAACTTGAGTATTGAAGGAAACCTATTTTCAGGTCACATTCCAACGGAGATTGAGAAGTTGATCAATTTAGAAAAAATCATTCTATCATCCAATGGATTCACAGGAGCATTGCCATCCTCACTTTCCAAGTTGACCAAGTTGATTGATTTGAGGTTAAGCGACAATAATTTCTTTGGGAAGATACCTGATTTCATTAGTAACTGGCCAGTGATAGAAAAGCTGCATATGCACGGTTGCTCTCTTGAGGGGCCAATACCTTCTAGCATTTCTGCCTTGACAAGATTAAGTGATTTGAGGATAACTGACCTAAAAGGTGATAAAACCTCAGCTTTCCCTCCACTAAATAACTTGAAATCCATGAAGACACTGGTATTGCGAAAATGCATGATTAAAGGAGAAATCCCAGAATATATTGGGAGAATGGAAAAGCTGAAAATCTTAGATTTGAGTTACAATGGCTTGAGTGGAGAGATACCTGAATCTTTTTCCGAACTTGACAAAGTAGACTTCATGTATCTTACTGGGAACAAGTTATCAGGGACTATACCTGGCTGGGTCCTAGGAAATAACAAAAACATTGATATCTCTGACAATAATTTCTCCTGGGATAGCTCAAGTCCAACTGAATGTCAACGAGGGAGCATAAACCTTGTTGAAAGCTACTCTTCATCTGTAAATACACAAAGTAAGATTCATGCATGCTTAAAAAGGAACTTTCCATGCCCTGCTTCTGTTAGCCAATATCAGTACGCCTTGAACATTAATTGTGGTGGTAAGGAAGCAAATATTAGTGATCACATTTATGAAGCTGATGGTGAGCGAAAAGGTGCTGCAATGTTATATTATAATAGCCAGGATTGGGCTCTGAGCAGCACTGGAAACTTCATGGACAATGATATTGACTCTGATCCATACATTGTGGCCAATACTTCTAGACTCAAAAATGTCTCTGCACTCAACTCACAACTCTATACAACAGCTCGTGTTTCTCCCCTTGCTCTCACATACTATGGCCTCTGCCTAATAAATGGAAATTACACAATCAAGCTTCACTTTGCAGAGATTATTTTCATCAATGATAGGTCACTTAATAGTCTTGGAAAGCGGGTATTTGACGTCTATATCCAGGGGGATATAGTGCTGAAAGACTTTGATATCCAAAGAGAAGCTGGTGGTACTGGCAAGCCAATTGTGAAGACATTCAATGCTACTGTCACCCAACATACTTTGAAGATTCACTTCTACTGGGCTGGAAAAGGAACCACTGGCATTCCCACAAGAGGAGTTTATGGACCTCTAGTATCTGCTATTTCAGTAAACCCTAATTTTAAACCTCCATCAAGGGATGACAACAGAACTTATGTCATACTGGCAATTGGCATAGTGGCTGGTGTTTTAGTTCTTGTACTGCTGGGGCTGGTTTTCATGAGGTGGATGGGATGGTTAGGAGGCAAAGATTCAGTGTATAAAGAGCTTAGGGGTATCGACCTGCAGACGGGATTATTTACACTAAGACAAATCAAAGCAGCAACCGAAAACTTCGATGCAGCAAACAAAATTGGCGAAGGTGGCTTTGGTTGTGTTTACAAGGGCCTACTATCGGATGGTACAATAATAGCAGTAAAGCAGCTGTCTTCAAAATCCAAACAGGGAAACCGTGAGTTTGTGAATGAGATGGGATTGATATCTGGACTCCAACATCCAAATCTTGTCAAGCTTTATGGATGTTGTGTGGAGGGGAACCAGCTAATACTGATATATGAGTATATGGAAAATAATTGTCTATCACGGATTCTTTTTGGGAGGAATCCAGAGAGCAGAATAAAACTAGACTGGCCAACAAGGAAGAAAATTTGTCTTGGTATAGCTAAAGCTTTGGCTTATCTTCATGAAGAGTCCAGAATAAAAATCATACATAGGGATATAAAGGCAAGTAATGTATTGCTCGACAAGGATTTTAATGCTAAAGTTTCAGATTTTGGCTTGGCAAAACTTATTGAAGATGACAAAACCCATATTAGCACTCGAGTAGCAGGAACAATTGGTTACATGGCTCCTGAGTATGCAATGCGTGGCTATCTAACTGACAAAGCAGATGTTTATAGCTTTGGGGTGGTTGCACTGGAAACTGTCAGCGGAAAAAGCAATACAAATTTCAGGCCAAACGAGGATTTTGTTTATCTTCTTGATTGGGCCTATGTTTTGCAAGAGAGAGGGAGTCTTCTGGAGCTGGTTGACCCAGATTTGGGTTCGGAGTATTCAAGTGATGAGGCCATGGTAGTGCTAAATGTGGCTCTCTTGTGTACTAATGCATCTCCTACACTTAGACCAACAATGTCCCAAGCTGTGAGCATGCTTGAAGGGTGGACTGATATTCAGGATCTACTTTCTGATCCGGGATATTCAGCTGTTAGTTCCAGTTCCAAATATAAGAGTATAAGAAATCACTTCTGGCAGAATCCTAGTAGAACACATAGCATGTCAATACCTAGTGTATATACTGATTCCTCTGGCTCTCATGTTGAAACTGAAAAGAGCTATCGTGTTGTAACAGTTAATTCAGATGGATCAGACAAGTCAAACTAG 3084 0.4089 MESNLGYSRMFFLLLLGSTSLIFLHLASAATPKLNTQEVKALKEIGSKIGKKDWDFGVDPCSGKGSWNASDDRKGFESSVMCDCSFNNSTSCHVVSIFLKGQNLSGSLSPMFSKLQYLTHLDLSRNIITGSIPPQWSTMRLVEISLMGNKLSGPFPKVLTNITTLRNLSIEGNLFSGHIPTEIEKLINLEKIILSSNGFTGALPSSLSKLTKLIDLRLSDNNFFGKIPDFISNWPVIEKLHMHGCSLEGPIPSSISALTRLSDLRITDLKGDKTSAFPPLNNLKSMKTLVLRKCMIKGEIPEYIGRMEKLKILDLSYNGLSGEIPESFSELDKVDFMYLTGNKLSGTIPGWVLGNNKNIDISDNNFSWDSSSPTECQRGSINLVESYSSSVNTQSKIHACLKRNFPCPASVSQYQYALNINCGGKEANISDHIYEADGERKGAAMLYYNSQDWALSSTGNFMDNDIDSDPYIVANTSRLKNVSALNSQLYTTARVSPLALTYYGLCLINGNYTIKLHFAEIIFINDRSLNSLGKRVFDVYIQGDIVLKDFDIQREAGGTGKPIVKTFNATVTQHTLKIHFYWAGKGTTGIPTRGVYGPLVSAISVNPNFKPPSRDDNRTYVILAIGIVAGVLVLVLLGLVFMRWMGWLGGKDSVYKELRGIDLQTGLFTLRQIKAATENFDAANKIGEGGFGCVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEMGLISGLQHPNLVKLYGCCVEGNQLILIYEYMENNCLSRILFGRNPESRIKLDWPTRKKICLGIAKALAYLHEESRIKIIHRDIKASNVLLDKDFNAKVSDFGLAKLIEDDKTHISTRVAGTIGYMAPEYAMRGYLTDKADVYSFGVVALETVSGKSNTNFRPNEDFVYLLDWAYVLQERGSLLELVDPDLGSEYSSDEAMVVLNVALLCTNASPTLRPTMSQAVSMLEGWTDIQDLLSDPGYSAVSSSSKYKSIRNHFWQNPSRTHSMSIPSVYTDSSGSHVETEKSYRVVTVNSDGSDKSN 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00297 1027 FunFam Putative LRR receptor-like serine/threonine-protein kinase 756 964 - -
Phco3g00297 1027 Gene3D - 413 608 - -
Phco3g00297 1027 ProSitePatterns Protein kinases ATP-binding region signature. 686 708 IPR017441 GO:0005524
Phco3g00297 1027 SUPERFAMILY L domain-like 82 367 - -
Phco3g00297 1027 Gene3D Transferase(Phosphotransferase) domain 1 756 964 - -
Phco3g00297 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Phco3g00297 1027 Gene3D Phosphorylase Kinase; domain 1 651 755 - -
Phco3g00297 1027 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 40 203 - -
Phco3g00297 1027 SUPERFAMILY Protein kinase-like (PK-like) 664 982 IPR011009 -
Phco3g00297 1027 Pfam Protein tyrosine and serine/threonine kinase 683 950 IPR001245 GO:0004672|GO:0006468
Phco3g00297 1027 Gene3D Ribonuclease Inhibitor 272 397 IPR032675 -
Phco3g00297 1027 Pfam Leucine rich repeat 286 344 IPR001611 GO:0005515
Phco3g00297 1027 Pfam Malectin domain 417 603 IPR021720 -
Phco3g00297 1027 CDD STKc_IRAK 686 954 - -
Phco3g00297 1027 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 649 755 - -
Phco3g00297 1027 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 234 382 - -
Phco3g00297 1027 ProSiteProfiles Protein kinase domain profile. 680 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00297 1027 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 415 608 - -
Phco3g00297 1027 Gene3D Ribonuclease Inhibitor 35 271 IPR032675 -
Phco3g00297 1027 SMART serkin_6 680 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00297 1027 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 986 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00297 Phco-Chr3 2112211 2122134 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco3g00297 PK_Tyr_Ser-Thr 2.9e-47 CL0016