Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00272 ATGGGTGGTTGTCTGAGTAAAAAAGGGTCAGAGCCAGAAGAGCACAATGGTTACAGACATGTTGTTGGGGGAGCTCACAATCACAAGAGCCATGAACCCTTTGTCAACCAATTACCTGAGAAACATGCTCCTCAGGCTGCTTGGAGGCCAACTGTTCATTCTCCAAGCCCAAAACATGTTCACAGGGCTGACACCATCACTGGGAAGCCATTGGAGGATGTTAAGCAGCACTATACACTTGGGAAAGAATTGGGGAGAGGTCAATTTGGGGTCACTTATCTCTGCACTGAAAATTCAACTGGCTTGCAATATGCCTGCAAGTCAATTTCAAAGAGGAAGCTTGTGAGAAGAGATGATAAGGAGGATATGAAGAGGGAGATTCAAATTATGCAGCATTTAAGTGGACAACCCAACATTGTGGAGTTCAAAGGTTCTTATGAGGATAAACACTCAGTTCATGTGGTCATGGAGCTGTGTGCAGGTGGTGAACTTTTTGATAGGATTATTGCCAAGGGGCACTACAGTGAAAGGGCTGCTGCTTCAATGTGTAGACATATTGTTAAAATTGTTAACATCTGCCATTTTATGGGAGTGATGCATAGGGATCTAAAGCCAGAGAATTTCTTGTTATCAAGTAAGGATGATAAGGGACTTCTCAAGGCCACAGATTTTGGTTTGTCGGTCTTCATAGAAGAAGGAAAGGTGTACCGGGACATAGTTGGCAGTGCGTACTATGTTGCTCCAGAAGTTCTTAATCGTAGCTATGGGAAGGAAGTAGATATATGGAGTGCAGGAGTTCTACTGTATATCTTACTTAGTGGTGTACCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATTCCATATTGCAGGGTCATATTGATTTTGAAAGCAATCCATGGCCAAGCATATCAAGCAGTGCTAAGGACCTTGTTCGCAAAATGCTTACAAAGGATCCGAAGAAACGCATTACTTCAGCTCAGGTTCTAGAGCACCCGTGGCTTAAAGAAGGTGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTGCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAGCTAAAAAAACTAGCCCTCAAGGTCATTGCTGAAAATCTTTCTGTAGAAGAGATCCAAGGTCTGAAGGCAATGTTCACAAATATGGACACTGACAATAGTGGTACAATCACCTATGAGGAACTGAGGGCAGGGTTGCAAAGACTAGGCTCAAAGCTAACTGAAGCTGAAGTGCGACAGCTTATGGACGCCGCTGATGTAGACGGAAATGGAACAATTGATTACATAGAATTCATCACTGCTACAATGCACAGACACAGGTTGGAGAGAGATGAACATCTTTATGGGGCCTTCCAATATTTTGACAAAGACGGTAGTGGGTATATCACAAGAGATGAACTGGAAACAGCCATGAAGGAGAATGGTATGGGTGACGATGCCACAATCAGGGAAATTATATCTGAAGTTGACATTGATAATGATGGTAGAATCAACTATGAAGAATTTTGTACAATGATGAGGAGTGGAACCCAACAAGGCAAGCTATTCTGA 1578 0.4284 MGGCLSKKGSEPEEHNGYRHVVGGAHNHKSHEPFVNQLPEKHAPQAAWRPTVHSPSPKHVHRADTITGKPLEDVKQHYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLVRRDDKEDMKREIQIMQHLSGQPNIVEFKGSYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASMCRHIVKIVNICHFMGVMHRDLKPENFLLSSKDDKGLLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLNRSYGKEVDIWSAGVLLYILLSGVPPFWAETEKGIFDSILQGHIDFESNPWPSISSSAKDLVRKMLTKDPKKRITSAQVLEHPWLKEGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSVEEIQGLKAMFTNMDTDNSGTITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGTIDYIEFITATMHRHRLERDEHLYGAFQYFDKDGSGYITRDELETAMKENGMGDDATIREIISEVDIDNDGRINYEEFCTMMRSGTQQGKLF 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00272 525 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Phco3g00272 525 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Phco3g00272 525 CDD STKc_CAMK 77 335 - -
Phco3g00272 525 MobiDBLite consensus disorder prediction 8 27 - -
Phco3g00272 525 FunFam Calcium-dependent protein kinase 1 80 163 - -
Phco3g00272 525 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Phco3g00272 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Phco3g00272 525 Gene3D Transferase(Phosphotransferase) domain 1 164 343 - -
Phco3g00272 525 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Phco3g00272 525 SUPERFAMILY EF-hand 375 515 IPR011992 -
Phco3g00272 525 Pfam Protein kinase domain 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00272 525 SMART efh_1 490 518 IPR002048 GO:0005509
Phco3g00272 525 SMART efh_1 383 411 IPR002048 GO:0005509
Phco3g00272 525 SMART efh_1 419 447 IPR002048 GO:0005509
Phco3g00272 525 SMART efh_1 455 483 IPR002048 GO:0005509
Phco3g00272 525 Pfam EF-hand domain pair 384 444 IPR002048 GO:0005509
Phco3g00272 525 Pfam EF-hand domain pair 454 516 IPR002048 GO:0005509
Phco3g00272 525 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Phco3g00272 525 CDD EFh_PI-PLC 384 517 - -
Phco3g00272 525 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Phco3g00272 525 FunFam Calcium-dependent protein kinase 1 344 519 - -
Phco3g00272 525 ProSiteProfiles Protein kinase domain profile. 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00272 525 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Phco3g00272 525 SMART serkin_6 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00272 525 CDD EFh 459 516 IPR002048 GO:0005509
Phco3g00272 525 MobiDBLite consensus disorder prediction 1 32 - -
Phco3g00272 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 71 511 - -
Phco3g00272 525 SUPERFAMILY Protein kinase-like (PK-like) 61 357 IPR011009 -
Phco3g00272 525 Gene3D Phosphorylase Kinase; domain 1 80 163 - -
Phco3g00272 525 Gene3D - 344 520 - -
Phco3g00272 525 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Phco3g00272 525 Coils Coil 401 421 - -
Phco3g00272 525 FunFam calcium-dependent protein kinase 1 164 343 - -
Phco3g00272 525 ProSiteProfiles EF-hand calcium-binding domain profile. 487 521 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00272 Phco-Chr3 1942272 1946015 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco3g00272 Pkinase 3e-74 CL0016