Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00238 ATGGCGAATTTGCCGCAATCAATCTCAATGAGTGGTGGGTCCTTTGGAGCTCCTTCTGTCTCTGCAACAAAGGATCGCAGAATGGCGTCTGTGGAACATCTTGTCCTCGAACTCAGCAACCCTGATCTCCGAGAAAACGCACTTCATGAACTCTCCAAGAAGAGAGAGTTATTTCAGGATCTCGCTCCATTATTGTGGAATTCTTTTGGTACTATGGCAGCACTTTTGCAGGAAATAGTTTCAATATACCCTGTTATTTCACCACCAAACCTGACTCCAGCACAATCAAATCGAGTCTGCAATGCTCTTGCTCTTCTTCAGTGTGTGGCGTCTCACCTTGATACAAGGATGCAATTCCTCAATGCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGTAAGTCCAGGCCATTTGAGTATTTGAGACTTACCAGTCTAGGAGTCATTGGTGCCTTGGTGAAGGTTGACGATACAGAAGTTATAAGTTTTCTTCTTTCAACCGAGATTATTCCGCTGTGCTTGCGTAGTATGGAAATGGGCAGTGAATTGTCAAAAACGGTTGCAACCTTTATAGTTCAAAAAATTCTGTTGGACGAAATTGGTTTGAAATATATTTGCACTACAGCAGAGCGCTTTTATGCAGTAGGTCGAGTTTTGGGAAACATGGTGGCAACTCTTGTAGAGCAACCGTCATGCCGTCTTTTGAAGCATATTATTCGTTGTTATCTTCGTCTGTCAGATAACCAGAGTGCTTGCGAGGCCTTGAGAACCTGTCTCCCAGACATGTTAAGAGACGCCACATTCAGTAGTTGCCTTCGGGAAGACCCAACAGCAAGGAGGTGGCTACAGCAGTTGCTTCACAATATAGGAGTCAATCGAGTTCCTGCACTTCAAGGTGGAGGAGGATTTGATCACATGATGGTGTCGTGA 939 0.4409 MANLPQSISMSGGSFGAPSVSATKDRRMASVEHLVLELSNPDLRENALHELSKKRELFQDLAPLLWNSFGTMAALLQEIVSIYPVISPPNLTPAQSNRVCNALALLQCVASHLDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRSMEMGSELSKTVATFIVQKILLDEIGLKYICTTAERFYAVGRVLGNMVATLVEQPSCRLLKHIIRCYLRLSDNQSACEALRTCLPDMLRDATFSSCLREDPTARRWLQQLLHNIGVNRVPALQGGGGFDHMMVS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00238 312 FunFam Cell differentiation protein RCD1 24 295 - -
Phco3g00238 312 SUPERFAMILY ARM repeat 36 273 IPR016024 -
Phco3g00238 312 Pfam Cell differentiation family, Rcd1-like 34 292 - -
Phco3g00238 312 Gene3D - 23 293 IPR011989 -
Phco3g00238 312 PANTHER UNCHARACTERIZED 24 295 IPR007216 GO:0006402|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00238 Phco-Chr3 1734839 1739308 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Phco3g00238 Rcd1 2e-128 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01977 11 16121797 16135297 Phco3g00238 3 1734839 1739308 PCT