Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00232 ATGGTTGAAGCCGTGGAAATCGAAGAGAGGCCAAAATTCAGAGATATTAGACGTTACTTCTGCCAGTACTGCGGTATCTGCAGATCCAAAAAAACCCTAATTACCTCTCACATCAATTCGCACCACAAGGAAGAGGATGAGAAGGCAAGAAAAGAAAGAGATCCTGAAACGGAGTCTTCGAAATCCAACACCTGCGAGGAATGTGGCGTCACTTTCAAGAAACACGCATATTTGTTGCAGCACATGCAAAGTCATTCGCTTGAGAGGCCGTTTGTGTGTGCTGTTGATGATTGTCAAGCGAGTTACAGAAGGAAGGACCACCTGACTAGGCACCTTCTACTACATGACGGGAAGACTTTCAAGTGTCCTGTTGTGAATTGCAACACTGAGTTCTCTTTGCAGAGCAATATGAAAAGACACGTTGAGGAGATTCACGATGACAGTTCTCCTGCACCTACTGACAAAAGTCACAAACAACATGTGTGTCCGGAGATTGGCTGTGGAAAGGTTTTCAGATTTGCTTCACGGCTAAAGAAGCATGAAGATTCTCATGTTAAGCTGGAGTCAGTAGATGTGGTGTGCTTAGAGCCTGGTTGCATGATGCATTTCACTAATGTTCAGTGCCTTAAAGCTCATTTAAAGTCCTCTCATCAATATATGACCTGTGACATCTGTGGGTCTAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAAGCTGACAGCAGTTCCTTAGAGACCTTTCAATGCGAGTTTAAGGGTTGTAGCTGCACATTCTCTAATAAATCTAATCTTGATAAGCATAAGAAGGCCGTGCACCTGAAAGAAAAACCTTTTCTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGGGATAATCACGAAAAAACTGTTAAACATGTTTTTACCCTTGGTGATTTTGAAGAAGCTGATGAAGAGTTCAGGTCAAGGCCGAGGGGAGGGAGGAAGAGAAAATGTCCTACTGTTGAAATGTTAATCAGGAAGAGGGTTACTCCACCTAGTCAATGGGAGGATTGGTTATTTATGCAGGATAGTGAGTAG 1086 0.4309 MVEAVEIEERPKFRDIRRYFCQYCGICRSKKTLITSHINSHHKEEDEKARKERDPETESSKSNTCEECGVTFKKHAYLLQHMQSHSLERPFVCAVDDCQASYRRKDHLTRHLLLHDGKTFKCPVVNCNTEFSLQSNMKRHVEEIHDDSSPAPTDKSHKQHVCPEIGCGKVFRFASRLKKHEDSHVKLESVDVVCLEPGCMMHFTNVQCLKAHLKSSHQYMTCDICGSKQLKKNIKRHLRSHEADSSSLETFQCEFKGCSCTFSNKSNLDKHKKAVHLKEKPFLCGFPDCGMRFAYKHVRDNHEKTVKHVFTLGDFEEADEEFRSRPRGGRKRKCPTVEMLIRKRVTPPSQWEDWLFMQDSE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00232 361 ProSitePatterns Zinc finger C2H2 type domain signature. 253 276 IPR013087 -
Phco3g00232 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 281 IPR013087 -
Phco3g00232 361 SUPERFAMILY beta-beta-alpha zinc fingers 118 146 IPR036236 -
Phco3g00232 361 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Phco3g00232 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Phco3g00232 361 Gene3D Classic Zinc Finger 158 242 - -
Phco3g00232 361 Gene3D Classic Zinc Finger 246 325 - -
Phco3g00232 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 120 IPR013087 -
Phco3g00232 361 MobiDBLite consensus disorder prediction 38 61 - -
Phco3g00232 361 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Phco3g00232 361 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Phco3g00232 361 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
Phco3g00232 361 Gene3D Classic Zinc Finger 6 91 - -
Phco3g00232 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Phco3g00232 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Phco3g00232 361 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Phco3g00232 361 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Phco3g00232 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Phco3g00232 361 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Phco3g00232 361 ProSitePatterns Zinc finger C2H2 type domain signature. 284 308 IPR013087 -
Phco3g00232 361 SMART c2h2final6 91 115 IPR013087 -
Phco3g00232 361 SMART c2h2final6 220 241 IPR013087 -
Phco3g00232 361 SMART c2h2final6 19 41 IPR013087 -
Phco3g00232 361 SMART c2h2final6 251 276 IPR013087 -
Phco3g00232 361 SMART c2h2final6 160 184 IPR013087 -
Phco3g00232 361 SMART c2h2final6 63 85 IPR013087 -
Phco3g00232 361 SMART c2h2final6 120 145 IPR013087 -
Phco3g00232 361 SMART c2h2final6 192 217 IPR013087 -
Phco3g00232 361 SMART c2h2final6 282 308 IPR013087 -
Phco3g00232 361 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Phco3g00232 361 PANTHER ZINC FINGER PROTEIN 8 346 - -
Phco3g00232 361 Gene3D Classic Zinc Finger 92 117 - -
Phco3g00232 361 SUPERFAMILY beta-beta-alpha zinc fingers 71 124 IPR036236 -
Phco3g00232 361 Gene3D Classic Zinc Finger 118 157 - -
Phco3g00232 361 SUPERFAMILY beta-beta-alpha zinc fingers 235 290 IPR036236 -
Phco3g00232 361 MobiDBLite consensus disorder prediction 38 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00232 Phco-Chr3 1687217 1689245 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco3g00232 zf-C2H2 0.0015 CL0361