Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00231 ATGGAACCCTCTTCCAATCATGCCATTGCTGAGCCTTCTTCACATCCAGTCATGTCCTTTAGAGGGACACCACTTCTCATGGATGCCCTCGATTTCTTCCCTGAGAAGAGTAAAGAGATTGAAGATGATGATGACATTGATCACCATCAAACACTGGAGTTTCATGTAGATACCAGTTTGGATCTCCTTACAAAGAATACCGGTGGCAACAGATCAATGGAGGAAAATGATGCATTGGAAACTATGGATGAAAAGAGCAGGTTTGTAGCTATGGTAACTGAATTGCACCAAATGAATGCTGAAAATCAAAGATTAAGAGAGTTGGTCGATCAGATGAACAATAACTGCAATGCCCTACGCATGCAACTTATCAGGATAACGCAGAAGCAGCAGAACCAAGGGAACAACGGAGTGAGTGGAGAGAAAGAAGACATGGTTCCAAGGTCATTTTTAGACATGGGTGTCACTGAGAAGGATGAGGCTTCCCAGCAACCCTCAGAGGAAAAACTCAGAGAAAGCAAAAGCGTGGTTGATTTGATGCATCAGTCTAAGGGTAGTGAGAAAGACATTGAAGATAAGTTGGATTGTGGAAGGGAAAGCTCAAAAGCTAGAATGGAAGGTGAGCAAGAACTTTCTAGCAAAGTTCCTAAATTGGATCAAAATTCAGAAACCTTGTCAATGATCAAGAAAGCTCGTGTGTCAGTTCGAGCAAGATCAGACTCCACAATGATTGCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCAAGGGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGTAAACAAGTACAAAGGTGTGCAGAAGATCGAAGTGTGCTGATCACAACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAGCTCAGGCAATGGCCTCCACCACATCTGCAGCTGCTTCAATGCTTCTTTCTGGATCAATGCCAAGCTCAGATGGCCTAATCAATCCAGCCATATTAGAAAGTGCTTCACTTCCATGCTCTCAAAACATGGCAACTCTCTCTGCCTCAGCTCCATTTCCCACCATCACACTTGATCTCACTCAAAATGCTACCAATTCCTCACAGCTACAAAGGGAACCACAGAACCAACTTAGCCTCCTCTCTCCCCTTTTGGCTCATAAGTTTATGTCAGTTCCAAAAATATTTGGACAGTCACTGTGTGATCAAACTAAGCTTGCTGGCTTGCATGAGTCTCAGGGAATGGACACATCTCCATCATTTGCTAACTCATTGAATGCAGCAACTGCTGCTATCACAGCAGACCCCAATTTCACTGCAGCTCTTGTGGCTGCTATAACATCCGTCATGGGGAGTTCACATAATAATTCAACTGGGGAAGACCAGTGCAATAATAATGCATGA 1422 0.4423 MEPSSNHAIAEPSSHPVMSFRGTPLLMDALDFFPEKSKEIEDDDDIDHHQTLEFHVDTSLDLLTKNTGGNRSMEENDALETMDEKSRFVAMVTELHQMNAENQRLRELVDQMNNNCNALRMQLIRITQKQQNQGNNGVSGEKEDMVPRSFLDMGVTEKDEASQQPSEEKLRESKSVVDLMHQSKGSEKDIEDKLDCGRESSKARMEGEQELSSKVPKLDQNSETLSMIKKARVSVRARSDSTMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPAILESASLPCSQNMATLSASAPFPTITLDLTQNATNSSQLQREPQNQLSLLSPLLAHKFMSVPKIFGQSLCDQTKLAGLHESQGMDTSPSFANSLNAATAAITADPNFTAALVAAITSVMGSSHNNSTGEDQCNNNA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00231 473 MobiDBLite consensus disorder prediction 156 218 - -
Phco3g00231 473 Gene3D WRKY domain 229 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g00231 473 FunFam probable WRKY transcription factor 31 229 306 - -
Phco3g00231 473 SMART WRKY_cls 244 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00231 473 MobiDBLite consensus disorder prediction 161 213 - -
Phco3g00231 473 SUPERFAMILY WRKY DNA-binding domain 237 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g00231 473 Coils Coil 95 129 - -
Phco3g00231 473 Pfam WRKY DNA -binding domain 246 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00231 473 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00231 473 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 72 463 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00231 Phco-Chr3 1682284 1685139 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g00231 WRKY 1.5e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02130 11 18145796 18148181 Phco3g00231 3 1682284 1685139 PCT
Phco11g01973 11 16076920 16081134 Phco3g00231 3 1682284 1685139 PCT