Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00206 ATGGAGACGGAGGAGGAGCTCGTCCCCGATCCCAAACCGGAGGACCAGTCCTTGCCGCTTCAGAACGGGGACTCTGACGACCGCTGTGCCAAGAAGCCCAAGGTTGACGCTGACGACGAATTGAAGAGAGTGGCGGAGATTGTTCTCGTTCTCTCCACCATGGCAACGGTGCGTGCGGGGAGGAAGCCTTCCGACGCTGAGGTCGAGCTCATGAGAGAGGCTCGCGCCAAGCTCGCCAGCCTCTGCCAGGGTTTGGCTCCCAAGGATATCGTTGCCAGGGAAGCAATTGGCACCGTCATCGAGGATCTCGGATTGCACTCCAAGCTTAAGGACCAGAGGCTAGGGTTTCGAACTCCCAAGATGTCTATTGCCGAGAGGTATTCCCATGCTAAGTGGAAGATGGAGGAAGCAAAGAAGTTTTCTGCACCGTCGACAACACATACATCTCAACCCTTACAACCAAACATTGGTGGACCTGTTGACAATCGTGTGCCATCACATGTTGTTCGAATTTTCCCTTCTGATAAATCAAGCCAGCCAGCAATCCCTTCTATGGGTACGGTGGTGTCTATTCCTCCCCATGTTTCAGCAGGGTCTTCTGCAGTATTGCAATACCAGTCAACTGGCAACGAAGTAAGACCACCTTTGGTTTCTGGTGTGATGCCTAGTGGTCACTTGGGGAGAAATTCATCTTCCTTAGTATTGCCTAAAGTTGAACATCCACAGTTCAAAGCTGATGGAGGATCAAATGGGTCTTCTTATATGCTGCAAGTCCAAGCAAATTCATCAGCGAACCAACCTTTGGTGAATGCTCCAACATGGTCTATACAGACTCATGCTGCTCCAATAGCAAGAACTGCATCCGAAAACAAGGTGCCTGCTACTAACTCTGTGAAGGTTGAAGGAACATCTGATATAACCATATCAAGGGCAGGGCCTCAAATAACAACAGACCAGAGCTTTAGACCGTTTATCACTCAAACAGCTTCTGTAAATTTGCCTAGTGTGCACCAGCCATTGCAGGCCACGAACATTGTTCAGCCTCCTTTGATTCCCAGTCACTCTGATATTGCAAAGGTTGTCCAGAAAGTGTTACAACCAAAGCTTCCCAGCCATCCCACTTGGATTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGATGTGTGAGCTAAGTGTTCATGAGGTTGATACTGTACTTCTTTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGTCTGCAGCCCTCGGTCTTGAGAGGAATTCATAACAGAGTTGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCAAAGTATGGTCGTGTCATGAGATCCTCAAACACACCACCAAAATTGCCCTCTAATACCGGTGGTATGCAAGCTTGTTTTGAGAATAAAGCAGAGAACATAGAACCAAAGGTCCTGCAGATGGTAGCAAATGGGAGCACTGTTCCAACTGTTGTCAGTGGCAATCACAATGTTGAGGTGGCATGTTACTCAAAGTTCCCTGATACCGAAGGTATTCAAGGGATTGGCATTTCATCTAGTATTGAAGCTATCGATAAGACACCTGATCCAAACAACTCTATGAAATCTCTTAGTGCAGCTTCTAGTCCTTCTATTGGCTTGCTAGGTGAATGCTCTACTAAACAATTAAATTCTAAGGTTTTGACCAGTAAAGAGACTTCAGAATGTGAGTCTCTTCCTAAATTGTCCGAGCTGGCTAGATGTGAAAGTATGCAATCATCACAAGACTTTCAAGTGGAACAGACAGTGTCAAAAGACAATGCTGAAGTATCACTGGATAAACACATTGATAGTAATATTATGAATAATAATCAGAAGGACTCTCTTGAAGGGGAGAATTTAACTTATGATATCAAGCGTGATGACCAAGATGCTGCACTTGCAAACATTGTTGGAATTTCTGGAATTAATACTGAAGGTAGACAGCACCCTGCATTATCTTCAGATAGTTCACATGCTGTAGAATGGATTGGTGATGTAGTACAACTCACAGATGAGAAGATTTTTTACCAATCTTGTTGTGTTGATGGAGTATCATATAGGCTACAGGGTCATGCTCTTTTTCCTACCAGCAATGGAAAACTAGCTCCTTCTAAACTCCAGTCTATGTGGGAAGATTGCAAAACTGGCGTAAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAATATTGGTCATCCGTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGATCTATTCAAGGTCCATGTGAAGTCCTCCCATCTGATAAATTTAAACAAGAAAATGACAGGCGATGTCAGTTAGGAATTGAGGAATGTACTAGAATACAGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAATTCAAAAAGTTATTTCAACCTGTAATCAGTTGA 2478 0.4431 METEEELVPDPKPEDQSLPLQNGDSDDRCAKKPKVDADDELKRVAEIVLVLSTMATVRAGRKPSDAEVELMREARAKLASLCQGLAPKDIVAREAIGTVIEDLGLHSKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFSAPSTTHTSQPLQPNIGGPVDNRVPSHVVRIFPSDKSSQPAIPSMGTVVSIPPHVSAGSSAVLQYQSTGNEVRPPLVSGVMPSGHLGRNSSSLVLPKVEHPQFKADGGSNGSSYMLQVQANSSANQPLVNAPTWSIQTHAAPIARTASENKVPATNSVKVEGTSDITISRAGPQITTDQSFRPFITQTASVNLPSVHQPLQATNIVQPPLIPSHSDIAKVVQKVLQPKLPSHPTWIPPSRDYMNKALTCQMCELSVHEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGMQACFENKAENIEPKVLQMVANGSTVPTVVSGNHNVEVACYSKFPDTEGIQGIGISSSIEAIDKTPDPNNSMKSLSAASSPSIGLLGECSTKQLNSKVLTSKETSECESLPKLSELARCESMQSSQDFQVEQTVSKDNAEVSLDKHIDSNIMNNNQKDSLEGENLTYDIKRDDQDAALANIVGISGINTEGRQHPALSSDSSHAVEWIGDVVQLTDEKIFYQSCCVDGVSYRLQGHALFPTSNGKLAPSKLQSMWEDCKTGVKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMAGSIQGPCEVLPSDKFKQENDRRCQLGIEECTRIQPIFLCRWFYDEFKKLFQPVIS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00206 825 CDD BAH 696 819 - -
Phco3g00206 825 ProSitePatterns Zinc finger PHD-type signature. 389 436 IPR019786 -
Phco3g00206 825 Gene3D - 676 824 IPR043151 -
Phco3g00206 825 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 22 823 - -
Phco3g00206 825 MobiDBLite consensus disorder prediction 141 160 - -
Phco3g00206 825 CDD PHD_SF 388 436 - -
Phco3g00206 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 450 IPR013083 -
Phco3g00206 825 Pfam PHD-finger 389 437 IPR019787 -
Phco3g00206 825 SUPERFAMILY FYVE/PHD zinc finger 379 444 IPR011011 -
Phco3g00206 825 SMART PHD_3 388 437 IPR001965 -
Phco3g00206 825 ProSiteProfiles Zinc finger PHD-type profile. 386 439 IPR019787 -
Phco3g00206 825 ProSiteProfiles BAH domain profile. 697 824 IPR001025 GO:0003682
Phco3g00206 825 MobiDBLite consensus disorder prediction 141 156 - -
Phco3g00206 825 MobiDBLite consensus disorder prediction 1 35 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco3g00206 PHD 1.5e-07 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00206 3 1506378 1513164 Phco3g00206 3 1506378 1513164 ECH