Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00187 ATGATGCCGTTTGTTAACCCTGACCCTTCAGACAAAGATTCTGAGCCCTTTGTTGAGACGGATCCGACTGGTCGCTATGGTAGATACAGTGAGTTACTTGGGTGTGGTGCTGTGAAGAAAGTGTACCGTGCATTTGATCAGGAAGAAGGAATAGAGGTGGCTTGGAACCAAGTGAAGCTGAGGAACTTCTGTGATGACCCTGCCATGGTGGATAGGCTTTACTCTGAAGTGAGGTTGCTTAGAAGCTTGGCCAACAAAAACATCATTGCACTTTACAATGTGTGGAGGGATGACCAGCGCAACACTTTGAATTTCATCACTGAGGTTTGTACCAGTGGTGATTTGAGGGAGTATAGGAAGAGGCACAGACATGTCTCCATGAAGGCCCTCAAGAAGTGGTCTAAGCAGATTTTGAAAGGGCTGAATTATCTGCACTTGCATGATCCCTGCATCATTCACAGAGATCTCAATTGCAGCAATGTGTTTGTCAATGGGAATACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCTGCAATTGTGGGCAAGAACCATTGTGCTCACACGATTCTTGGCACACCAGAATTCATGGCTCCGGAGTTATATGATGAAGACTACACAGAGTTGGTGGACATTTACTCATTTGGCATGTGTGTGCTGGAAATGGTGACAGTGGAGATTCCTTACAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGTGTTCTGGAGTTAGACCTGCAGCCCTGAACAAGGTGAAAGATCCAGAGGTGAAGGCCTTCATTGAGAAGTGCCTTGCTCAGCCAAGAGCTAGACCTTCTGCAGCTGACCTTCTCAAAGATCCCTTCTTTGATGAGATTGTTGATGATGACGACTAA 882 0.458 MMPFVNPDPSDKDSEPFVETDPTGRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDDPAMVDRLYSEVRLLRSLANKNIIALYNVWRDDQRNTLNFITEVCTSGDLREYRKRHRHVSMKALKKWSKQILKGLNYLHLHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKNHCAHTILGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTVEIPYSECDNVAKIYKKVCSGVRPAALNKVKDPEVKAFIEKCLAQPRARPSAADLLKDPFFDEIVDDDD 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00187 293 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Phco3g00187 293 MobiDBLite consensus disorder prediction 1 23 - -
Phco3g00187 293 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Phco3g00187 293 CDD STKc_WNK 25 285 - -
Phco3g00187 293 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
Phco3g00187 293 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Phco3g00187 293 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00187 293 SUPERFAMILY Protein kinase-like (PK-like) 21 290 IPR011009 -
Phco3g00187 293 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00187 293 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00187 Phco-Chr3 1356275 1358485 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Phco3g00187 Pkinase 3.7e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00187 3 1356275 1358485 Phco3g00187 3 1356275 1358485 ECH
Phco11g01899 11 15327008 15328853 Phco3g00187 3 1356275 1358485 PCT