LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco3g00185	ATGGACGCCTCCGCTGAGCCCGGCCCCAGTTCGGAGCTCCGGCTCAACGGGGCATCCGAGGATCCAAATCGAAGTGGGTCGGGTCAGAATTTGACGGCGAGGTACAAGCTGATTGCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCCCCGGGACTGAGTCCAACGTCGTTTCTGGAATCACCGGTTCTTCTTTCCAATATGAAGGTGGAGTCTTCACCAACTACAGGGTCCCTCCGCAAGCTTCAACAAACAGTACATGGTTCTAAGGCTTCTGCTACCTCTGCCACATTTGCAGTAACCACTTCATGCTTCAGTACCAATACTGTTGATGACAGGAAATCAAGCTTCTTTGAGTTTAAACCACTCAACAGGTTGAATATGGTTCCTGCAGACTTCAATAACCGTGTTATCAAACAATCAACTCAAGTAGATGGTCTAGGAAAAGCTCAATCATTTGTTTCCTCGCCATTAGTTGAAAGTGAGATAGCAGTTCCTGCTAACGAATTAAGTCTATCATCACCTGTACAAATGGTTAGTTCTTGTCCTAGTTCTGCTGTTGATGTTGATTTGGATGACGTTAACCACAAAGGCAACACACCTACTGGGCTTCAAGCATCACATGTGGATGTTAGAGGCAATGGACTTTCAGTTGCAACTGAGAAAACATCTGATGACGGATACAATTGGCGAAAATATGGGCAAAAACTTGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATTACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCTACTGGTACTATTATGTCTATTCAAGTAGAGAGATCTGATAAGGCTTCTTCTTTGGCTGGCCTAGATGACAAAGCACCCTCCATGTATGGTCAGTTGTCCCATGCTGCTGAGCCCAACAGTGTTTCTGAGCCATCACCTGTAGCAACAAAAGGTGATGGTTTAGAGGGTGTTGGGTTTGTGTCAAACAGGATTGGTGATGATGCTGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGATATATTGGATGATGGGTATCGCTGGCGTAAGTATGGCCAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCGGGTTGCCCTGTCAGAAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCAGTGATAACCACATATGAGGGTAAACACAATCATGATGTACCAGCTGCAAGGAATAGCAGCCATGACATGGCAGTTGCGGCAGCTGGACAGACAAGAATTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGCATTAGCTCAGCTGCTGAACATAGATCAAACGCACAAGGGAAAATAATGCACTCTGAATTTGGGGACACTCAAACTCACTCAAGTAATTCCAATTTCAAGTTTGTTCATACTACCTCGGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCTAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTCCAGCTTTAAACCATGCCTCGTATCCTTGCCCACAGAGCATGGGAAGAATACTAATGGGTCCAGGAAATTGA	1755	0.4479	MDASAEPGPSSELRLNGASEDPNRSGSGQNLTARYKLIAPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVESSPTTGSLRKLQQTVHGSKASATSATFAVTTSCFSTNTVDDRKSSFFEFKPLNRLNMVPADFNNRVIKQSTQVDGLGKAQSFVSSPLVESEIAVPANELSLSSPVQMVSSCPSSAVDVDLDDVNHKGNTPTGLQASHVDVRGNGLSVATEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSCRYSTGTIMSIQVERSDKASSLAGLDDKAPSMYGQLSHAAEPNSVSEPSPVATKGDGLEGVGFVSNRIGDDADDDDPFSKRRKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAVAAAGQTRIKLEESDTISLDLGMGISSAAEHRSNAQGKIMHSEFGDTQTHSSNSNFKFVHTTSAPVYFGVLNNSSNPYGSRDNRSDGPALNHASYPCPQSMGRILMGPGN	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco3g00185	584	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	147	505	IPR044810	GO:0003700
	Phco3g00185	584	Pfam	WRKY DNA -binding domain	229	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco3g00185	584	Pfam	WRKY DNA -binding domain	405	461	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco3g00185	584	SUPERFAMILY	WRKY DNA-binding domain	396	464	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco3g00185	584	SMART	WRKY_cls	404	463	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco3g00185	584	SMART	WRKY_cls	228	286	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco3g00185	584	FunFam	WRKY transcription factor 33	391	457	-	-
	Phco3g00185	584	FunFam	WRKY transcription factor	218	288	-	-
	Phco3g00185	584	MobiDBLite	consensus disorder prediction	16	31	-	-
	Phco3g00185	584	Gene3D	WRKY domain	389	465	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco3g00185	584	Gene3D	WRKY domain	220	288	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco3g00185	584	MobiDBLite	consensus disorder prediction	1	31	-	-
	Phco3g00185	584	ProSiteProfiles	WRKY domain profile.	399	464	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco3g00185	584	MobiDBLite	consensus disorder prediction	552	584	-	-
	Phco3g00185	584	ProSiteProfiles	WRKY domain profile.	223	287	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco3g00185	584	SUPERFAMILY	WRKY DNA-binding domain	224	287	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco3g00185	Phco-Chr3	1333994	1339121	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Phco3g00185		WRKY	1.4e-25	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco3g00185	3	1333994	1339121	Phco3g00185	3	1333994	1339121	ECH
	Phco11g01897	11	15294299	15299301	Phco3g00185	3	1333994	1339121	PCT