Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00183 ATGCACATGTCTCATAAACATAAAATGTCCTATGAGCCTGTCCAAAATTTTGGGTCATGCTGCTTCCTACAAAGTGAGAACCTAGACTACTATTCATCCTCTGATAACAGTGGCCATGCAACCTACCCTTCTGTTCGTACTTCAGAACAATATTGCACCCTGGAATCTTCTACAAAGAACAGTTTTCCTTCCCTTAATTCCCCATCTACTGTCAGTTTCTCACCTAACAATAGCCCAGTCTCAAAGCTACAGCCGAAATCATATGTGTTGAGTTCACAGAATTCTCTTGAAATAGCTAATGATTCACTAGAAAATGAATCTTGTTTGACGCATGATGACAATGAGCTGAGGCACAAGATAAGAGAGCTGGAAAGTGTTATGTTGGGACATGATGCAGATATTCTGGATATGTATGATACTGTAATTCCAGAGGAATCTGAGTCGTTTTTGCTAGAGGCAGAAAGGTGGAAGAAAATGATGGAAATGATATCTAGAGGGGATTTGAAAGAGATGCTTTGTACATGTGCAATAGCAGTGGCAGGAAATGATATGGAGACAACTGAATGGTTGATGTCAGAGTTACGGAAAATGGTCTCCATTTCGGGCAATCCAATCCAACGATTGGGGGCATACATGCTGGAGGCTCTTGTTGCAAGACTGGCCTCTTCAGGAAGCACAATCTACAAAGCCTTGAAATGTAAAGAGCCTACTGGTAGGGAACTCCTTTCACACATGCATCTACTTTATGAAATCTGCCCATATCTCAAATTTGGGTACATGTCAGCAAATGGAGCTATTGCTGAAGTGATGAAGGAGGAAAGTGAAATCCACATAATTGATTTTCAGATCAACCAGGGAATACAATGGGTGAGCCTAATCCAAGCTCTTGCTGGCAGACCTGGAGGACCCCCCAAGATCAGAATAACAGGTTTAGATGACTCCACTTCAGCTTATGCCCGGGAAGGAGGCCTTGAAATTGTGGGAGAAAGGTTGTCAACACTTGCAAAATCATATAGTGTACCCTTTGAGTTCCATGCCTTAGAAGTTGCTCCCACTGAGGTTGAAATTAAGGACCTCAAACTTCGACCTGGTGAAGCTATTGCTGTGAATTTTGCCATGATGCTGCACCATCTTCCAGATGAAAGTGTGGATAGTCAGAACCATCGAGACCGGTTGTTGAGAATGGCAAAGTGCTTGTCTCCAAAGATCGTAGCACTAGTTGAGCAAGAATCACACACCAGCAACCTCCCATTCTTCCCCCGTTTTGTTGAGACAATGAACTACTACTTGGCTATTTTTGAATCAATTGATGTTGCTCTTCCAAGGGAGAACAAAGAAAGGATTAACGTGGAACAGCATTGTTTGGCTCGAGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAAAGAGTAGAACGTCACGAGCTTCTCGAGAAATGGAGATCACGTTTCACTATGGCTGGATTCTCACCATATCCGTTGAACTCCTTTATTACTTGTTCGATTAAAAATCTTCAGCAAAGCTACCAAGGACATTACACTCTAGAAGAGAGAGATGGAGCTCTATCTCTTGGTTGGATGAATCAAGTTCTTATTACTTCTTGTGCTTGGAGGTGA 1617 0.4249 MHMSHKHKMSYEPVQNFGSCCFLQSENLDYYSSSDNSGHATYPSVRTSEQYCTLESSTKNSFPSLNSPSTVSFSPNNSPVSKLQPKSYVLSSQNSLEIANDSLENESCLTHDDNELRHKIRELESVMLGHDADILDMYDTVIPEESESFLLEAERWKKMMEMISRGDLKEMLCTCAIAVAGNDMETTEWLMSELRKMVSISGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPTGRELLSHMHLLYEICPYLKFGYMSANGAIAEVMKEESEIHIIDFQINQGIQWVSLIQALAGRPGGPPKIRITGLDDSTSAYAREGGLEIVGERLSTLAKSYSVPFEFHALEVAPTEVEIKDLKLRPGEAIAVNFAMMLHHLPDESVDSQNHRDRLLRMAKCLSPKIVALVEQESHTSNLPFFPRFVETMNYYLAIFESIDVALPRENKERINVEQHCLAREVVNLVACEGAERVERHELLEKWRSRFTMAGFSPYPLNSFITCSIKNLQQSYQGHYTLEERDGALSLGWMNQVLITSCAWR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00183 538 Pfam GRAS domain family 169 538 IPR005202 -
Phco3g00183 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 117 532 IPR005202 -
Phco3g00183 538 MobiDBLite consensus disorder prediction 59 80 - -
Phco3g00183 538 ProSiteProfiles GRAS family profile. 159 538 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00183 Phco-Chr3 1328409 1330025 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco3g00183 GRAS 2.3e-129 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00183 3 1328409 1330025 Phco3g00183 3 1328409 1330025 ECH
Phco11g01896 11 15290324 15291964 Phco3g00183 3 1328409 1330025 PCT