Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00152 ATGAGTAAGAGAGGGATTAAGGCTAAGAATTGTATAGAACAAGGTATCTTGCCATGTGTGGGGGAGGGGTCATATATGTCTGGCACATGCATTCGACAACGCCAAGGCTTTGAGAGTTGCTCAGCAGTGGAAAGGAACTTGATCTTTCAAGAATCAGATATCACCAGACTTCACCCTTATCAGCGAATGATCATGATGAAAGTAACAAAGCAACAGATCAGTCACAAGCTGTGTCCAAGTCTAGGCAGTTTATTACCAATCACTCTGGTTCTTGTCCTTCTATTTTCAATTTTCATTTTCTTTTCAGTTTCTGAATCCTCTCCTTCCCTTGGTACACTACTGATTGCTCTTCTATCTACCATGTTTCTTGTCACACTGGCAAGGCAAAAAGGGTCCTTGCATGAAAATCTTGTCCAAGATAACCAGAAGAAATTGGAGTTACATCCTTCATTGGGAGATATTACTACCCAACAAAGTTGTGAAAGCAGAAACATCATGGATAAAAGTTTTGAACTCAGTGCTGAGAAGTATGAGCAAATAGCTGATCCAAAGTCAAAAACTTCACTTCCATCAGATACTGAAAGCAACACCAGCTCAACCGTGGGTGGAGAAAGTACTGAGATTCATCACAGTACAAATCAAAATCTTGATATATCTGATAACTTGGAGGTTGATAGTGATGATGATTACGAGGAGGAGGATGGCTTGATTGAAATCAAACTTCCAAACAACCACTTTTCAGAGTTCTGGCCAGAATGTTTTTTCAAACAGCAAGGTTTCACAGAGCTCTTGGCAGAAATCAATGAGATGAATGAGGATGAAAACTTAATTGAGATTGATATCTCCAAGGGATCCACAAAACAAAAAGATTTGAGATTGGAGAAGGAGTTGGTTATTGTTATAAATGTTGATCTCGCCGCGGACTCGAGCGTGGGAAAATGCCTCGTCTCTCCTTCGTCTGGCTTTCCAGCTGCTGCGTCCTTCGGAATCGTTACTGAGTTGTCCATGGCTGACTCGGACAACGACTCGGGGGGAGCGCAGAACGCGGGGAACAGCGGCTTCAGCGAGTTGTCGCCTCGGGAACAGGACCGCTTCCTTCCAATCGCCAACGTGAGCAGGATCATGAAAAAAGCTCTGCCGGCGAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTGCAGGAATGCGTGTCGGAGTTCATAAGTTTCATCACCGGCGAAGCTTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACAATCAACGGCGATGACCTTCTGTGGGCCATGACCACCTTGGGATTCGAGGACTACGTGGAGCCACTCAAAATTTACCTCCAGCGCTTCCGCGAGATCGAGGGAGAGAAGACCGTGGCCGCTCGCGACAAGGAAGCCTCCTCCTCTGCCGTCAGCGGCTACGACTACTCCCCGTCCTCCGCCGCCGCCGCCATGATGCATCATCAGGGACACGTCTACGGCTCCCCCGCGTTCCATCAAGTGAGTGCCGCTCCGGTTATGGGTAAGCCTGGGCCCGGGCCTGGGCCCAGTTATCCTGCCCCTGGTCGACCCAGATAG 1572 0.4822 MSKRGIKAKNCIEQGILPCVGEGSYMSGTCIRQRQGFESCSAVERNLIFQESDITRLHPYQRMIMMKVTKQQISHKLCPSLGSLLPITLVLVLLFSIFIFFSVSESSPSLGTLLIALLSTMFLVTLARQKGSLHENLVQDNQKKLELHPSLGDITTQQSCESRNIMDKSFELSAEKYEQIADPKSKTSLPSDTESNTSSTVGGESTEIHHSTNQNLDISDNLEVDSDDDYEEEDGLIEIKLPNNHFSEFWPECFFKQQGFTELLAEINEMNEDENLIEIDISKGSTKQKDLRLEKELVIVINVDLAADSSVGKCLVSPSSGFPAAASFGIVTELSMADSDNDSGGAQNAGNSGFSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREIEGEKTVAARDKEASSSAVSGYDYSPSSAAAAMMHHQGHVYGSPAFHQVSAAPVMGKPGPGPGPSYPAPGRPR 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00152 523 MobiDBLite consensus disorder prediction 184 220 - -
Phco3g00152 523 MobiDBLite consensus disorder prediction 181 230 - -
Phco3g00152 523 MobiDBLite consensus disorder prediction 501 523 - -
Phco3g00152 523 MobiDBLite consensus disorder prediction 339 358 - -
Phco3g00152 523 Gene3D Histone, subunit A 354 485 IPR009072 GO:0046982
Phco3g00152 523 PRINTS CCAAT-binding transcription factor subunit A signature 431 449 - -
Phco3g00152 523 PRINTS CCAAT-binding transcription factor subunit A signature 393 411 - -
Phco3g00152 523 PRINTS CCAAT-binding transcription factor subunit A signature 412 430 - -
Phco3g00152 523 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 340 472 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco3g00152 523 SUPERFAMILY Histone-fold 362 465 IPR009072 GO:0046982
Phco3g00152 523 ProSitePatterns NF-YB/HAP3 subunit signature. 396 412 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco3g00152 523 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 365 429 IPR003958 -
Phco3g00152 523 MobiDBLite consensus disorder prediction 507 523 - -
Phco3g00152 523 FunFam Nuclear transcription factor Y subunit B-3 354 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00152 Phco-Chr3 993511 999981 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco3g00152 CBFD_NFYB_HMF 9.5e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01865 11 14982035 14982865 Phco3g00152 3 993511 999981 PCT