Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00126 ATGTCTGTAAGCTTAAGGAATCACTCACTTCCTCCCCAAATCTTCTCCCTCACCTTGCTTCTTTTGTTGAACTCTCTTTTGTTTTCTTCTTGTTACTCCCTGCTTAATGAGCAAGGCCAAGCTCTTTTAGCTTGGAAAAACAGTTTAAACAGTACTGCAGATGCATTAGCATCTTGGAATCCTTCCAGCCCAAGCCCATGCAATTGGTTTGGGGTGCGCTGCAACTTACAAGGAGAGGTGGTTGAGATAAACCTGAAGTCAGTGAACTTGCAAGGCTCATTACCTTCATATTTTCAACCTCTAAGGTCCTTGAAGATTCTTGCCCTCTCAACAGCCAACATCACAGGCAGGATTCCAAAGGAGATTGGAGACTGTAAAGAGCTCACTTTCATTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTGAGCAAACTGCAGACTTTAGCTCTGCATGCCAACTTTCTTGAAGGCAACATTCCATCCAGCATTGGAAATTTATCAAGTCTGGTGAACTTGACACTCTATGACAACAAACTGAGTGGCGAAATTCCAAAGAGTATTAGCTCATTAGCTGAGCTCCAAGTGTTGAGAGTAGGAGGAAACACAAACCTCAAGGGTGAGGTGCCATGGGAAATTGGAAACTGCACCAACTTGGTGGTGTTAGGCCTTGCAGAAACCGGCATTTTTGGGAATCTTCCTTCTTCAATAGGGAAGCTGAAAAGAATTCAGACCATAGCCATTTACACAACCCTGCTTTCAGGCTCTATACCAGAAGAGATAGGGAAGTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATCTCTGGTTCAATCCCAAGTCAAATTGGAGAGCTCAGCAAGCTTCAGAATCTTCTCTTATGGCAAAACAATATAGTTGGTACAATCCCAGAAGAGCTTGGAAGCTGCACTCAGCTGGAAGTCATAGACATCTCAGAAAATCTTCTCACTGGTAGCATACCAACCACTTTTGGTAAGCTATCAAATCTACAAGGGCTTCAACTGAGTGTTAATAAGCTTTCAGGCATTATACCTCCTGAAATCACAAATTGCACTTCCCTGACTCAACTGGAAGTTGACAATAATGCTATTTTTGGAGATATTCCTCCTATTATCGGCAATTTGAGAAGGTTGACTCTCTTCTTTGCATGGCAGAACCAGCTGTCAGGAAAAATCCCAGATAGTCTTTCACAGTGCCAAGATCTTCAGGCACTTGATCTCTCTTACAACAATTTAACTGGTCCAATACCCAAACAACTTTTTGGGCTGAGGAACCTCACTAAACTGTTGCTTCTTTCCAATGATTTGTCAGGCTTTATACCACCAGAGATAGGTAACTGCACAAGCCTCTATAGGTTGAGGTTAAATCACAATAGACTGTCAGGTAGAGTTCCATCTGAGATCAGCAACTTGAAGAATTTGAACTTTTTGGACGTGAGCAGCAATCATCTTGTCGGGGAAATTCCTCCTACACTATCCAGATGCCAAAATCTTGAGTTTCTGGACCTCCACTCAAATAGTCTAATTGGCTCAGTTCCAAACAATCTGCCCAAAAACCTACAGTTAATCGACCTCTCAGACAACAGGCTAACTGGTGAACTAAGCCATTCCATTGGTTCATTAACCGAGTTAGCCAAACTCAACTTGGGAAAGAATCAACTCAGAGGAAGCATCCCTGCTGAGATCCTATCTTGCTCCAAGTTACAACTTCTGGACTTGGGAAACAATAGTTTCTCTGGAGAAATTCCCAAGGAAGTTGCTCAAATTCCTTCTCTAGAAATCGTTCTCAATCTGAGCTGTAACCAGTTTTCTGGAGAAATTCCACCCCAGTTCTCCGGTCTTAGGAAACTTGAAGTGCTTGACCTCTCCCACAACAAGCTCTCAGGGAAGTTGGATGCTCTCTCTGACCTTCAAAACCTTGTTTCGTTAAATGTTTCCTTCAATGATTTCACTGGAGAATTGGCTAATACCCCATTCTTCAGGAAGCTCCCTCTCAGTGATCTCACAGGAAATGATGGCCTCTACATTGTTGGTGTTGCAACTCCAGCTGACAGAAAGGAAGCCAAGGGTCATGCCAGGTTGTTTATGAAGATTATATTGTCCATTCTCTTAAGCATCAGTGCAGTACTAGTACTGCTCACAGTCCATGTCTTAATTCGTGCTCATGTTTCTAACAAAGTACTCATGCGAAACAACAATTGGGTGTTAACTTTGTATCAGAAGTTTGAATTGTCTGTTGATGATATTGTCCGGAATTTGACTTCATCCAATGTGATCGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTTACAATTCCAAATGGACAAACAGTGGCAGTTAAAAAGATGTGGTCATCGGCAGAGTCAGGAGCATTTACTTCTGAAATTCAAACACTAAGTTCAATTAGACACAAGAACATCATCAAACTTCTGGGTTGGGGGTCCAACAAGAACATGAAGCTTCTGTTTTATGAGTACCTCCCTAATGGAAGCCTGAGCTCATTACTTCATGGTTTAGGAAAAGGAAAAGCAGAATGGGAGACCAGATATGATGTTATGTTAGGAGTGGCTCATGCACTTGCATATTTGCACCATGACTGTGAGCCTTCCATATTGCATGGAGATGTTAAAGCCATGAACGTGTTGTTAGGTCCTGGTTATCAGCCTTACCTTGCTGACTTTGGCCTAGCTAGAATTGCAAGTGAAAATGTTGATTGTACTAATTCCAAGCCACTTCAAAGACCCTACCTTGCTGGCTCCTATGGGTACATGGCTCCAGAACACGCATCTATGCAGCAGATCACTGAGAAAAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCCCTTGACCCAACACTTCCTGGGGGTGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCAAGCAAAGGAGACCCATCTGACATTCTTGACCCAAAACTGAGAGGGAGAACTGATTCCACTGTGCATGAAATGCTACAAACCCTAGCTGTGTCATTTCTATGTGTCAGCACCCGAGCTGAGGACCGTCCAACAATGAAGGACACTGTTGCACTGCTCAGGGAAATTCGACTTGTTGAGACCCCAACCAGAGGTCCTGATGCATTGAAGGGAGTTTCAACAGTGCATGCTTCTCCATCATCTCTTAAAAATGTAGTTTCATAA 3237 0.4334 MSVSLRNHSLPPQIFSLTLLLLLNSLLFSSCYSLLNEQGQALLAWKNSLNSTADALASWNPSSPSPCNWFGVRCNLQGEVVEINLKSVNLQGSLPSYFQPLRSLKILALSTANITGRIPKEIGDCKELTFIDLSGNSLFGEIPEEICRLSKLQTLALHANFLEGNIPSSIGNLSSLVNLTLYDNKLSGEIPKSISSLAELQVLRVGGNTNLKGEVPWEIGNCTNLVVLGLAETGIFGNLPSSIGKLKRIQTIAIYTTLLSGSIPEEIGKCSELQNLYLYQNSISGSIPSQIGELSKLQNLLLWQNNIVGTIPEELGSCTQLEVIDISENLLTGSIPTTFGKLSNLQGLQLSVNKLSGIIPPEITNCTSLTQLEVDNNAIFGDIPPIIGNLRRLTLFFAWQNQLSGKIPDSLSQCQDLQALDLSYNNLTGPIPKQLFGLRNLTKLLLLSNDLSGFIPPEIGNCTSLYRLRLNHNRLSGRVPSEISNLKNLNFLDVSSNHLVGEIPPTLSRCQNLEFLDLHSNSLIGSVPNNLPKNLQLIDLSDNRLTGELSHSIGSLTELAKLNLGKNQLRGSIPAEILSCSKLQLLDLGNNSFSGEIPKEVAQIPSLEIVLNLSCNQFSGEIPPQFSGLRKLEVLDLSHNKLSGKLDALSDLQNLVSLNVSFNDFTGELANTPFFRKLPLSDLTGNDGLYIVGVATPADRKEAKGHARLFMKIILSILLSISAVLVLLTVHVLIRAHVSNKVLMRNNNWVLTLYQKFELSVDDIVRNLTSSNVIGTGSSGVVYKVTIPNGQTVAVKKMWSSAESGAFTSEIQTLSSIRHKNIIKLLGWGSNKNMKLLFYEYLPNGSLSSLLHGLGKGKAEWETRYDVMLGVAHALAYLHHDCEPSILHGDVKAMNVLLGPGYQPYLADFGLARIASENVDCTNSKPLQRPYLAGSYGYMAPEHASMQQITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGGAHLVQWVRNHLASKGDPSDILDPKLRGRTDSTVHEMLQTLAVSFLCVSTRAEDRPTMKDTVALLREIRLVETPTRGPDALKGVSTVHASPSSLKNVVS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00126 1078 SUPERFAMILY RNI-like 82 404 - -
Phco3g00126 1078 Pfam Leucine Rich Repeat 534 556 IPR001611 GO:0005515
Phco3g00126 1078 Gene3D Phosphorylase Kinase; domain 1 745 841 - -
Phco3g00126 1078 SMART serkin_6 768 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00126 1078 FunFam Putative LRR receptor-like serine/threonine-protein kinase 610 695 - -
Phco3g00126 1078 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 195 285 - -
Phco3g00126 1078 Gene3D Ribonuclease Inhibitor 609 699 IPR032675 -
Phco3g00126 1078 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515
Phco3g00126 1078 SUPERFAMILY RNI-like 335 669 - -
Phco3g00126 1078 Gene3D Ribonuclease Inhibitor 35 193 IPR032675 -
Phco3g00126 1078 Gene3D Ribonuclease Inhibitor 532 608 IPR032675 -
Phco3g00126 1078 Gene3D Ribonuclease Inhibitor 433 531 IPR032675 -
Phco3g00126 1078 SMART LRR_typ_2 629 652 IPR003591 -
Phco3g00126 1078 SMART LRR_typ_2 486 510 IPR003591 -
Phco3g00126 1078 SMART LRR_typ_2 438 462 IPR003591 -
Phco3g00126 1078 SMART LRR_typ_2 149 173 IPR003591 -
Phco3g00126 1078 SMART LRR_typ_2 101 125 IPR003591 -
Phco3g00126 1078 SMART LRR_typ_2 294 318 IPR003591 -
Phco3g00126 1078 SMART LRR_typ_2 342 366 IPR003591 -
Phco3g00126 1078 SMART LRR_typ_2 556 580 IPR003591 -
Phco3g00126 1078 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Phco3g00126 1078 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Phco3g00126 1078 PANTHER UNNAMED PRODUCT 19 529 - -
Phco3g00126 1078 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1061 - -
Phco3g00126 1078 ProSiteProfiles Protein kinase domain profile. 768 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00126 1078 MobiDBLite consensus disorder prediction 1055 1078 - -
Phco3g00126 1078 Pfam Protein kinase domain 771 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00126 1078 Pfam Leucine rich repeat 320 379 IPR001611 GO:0005515
Phco3g00126 1078 Pfam Leucine rich repeat 610 665 IPR001611 GO:0005515
Phco3g00126 1078 FunFam Leucine-rich receptor-like protein kinase family protein 337 609 - -
Phco3g00126 1078 SMART LRR_sd22_2 532 558 - -
Phco3g00126 1078 SMART LRR_sd22_2 486 515 - -
Phco3g00126 1078 SMART LRR_sd22_2 173 199 - -
Phco3g00126 1078 SMART LRR_sd22_2 629 654 - -
Phco3g00126 1078 SMART LRR_sd22_2 270 296 - -
Phco3g00126 1078 SMART LRR_sd22_2 318 347 - -
Phco3g00126 1078 FunFam Leucine-rich receptor-like protein kinase family protein 35 194 - -
Phco3g00126 1078 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Phco3g00126 1078 Gene3D Transferase(Phosphotransferase) domain 1 842 1055 - -
Phco3g00126 1078 PRINTS Leucine-rich repeat signature 417 430 - -
Phco3g00126 1078 PRINTS Leucine-rich repeat signature 629 642 - -
Phco3g00126 1078 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 737 841 - -
Phco3g00126 1078 Gene3D Ribonuclease Inhibitor 200 432 IPR032675 -
Phco3g00126 1078 SUPERFAMILY Protein kinase-like (PK-like) 760 1044 IPR011009 -
Phco3g00126 1078 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00126 Phco-Chr3 830029 833355 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g00126 Pkinase 5.9e-39 CL0016