Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00110 ATGCAATCCAAATCTGAAACTGCTAATCAGCCAAGGTCTAATCCACATTCCTTTGCACCTAACAATGTCTATTCTGAACCCTGGTGGCGAGGTATTCAGTACAATTCTGTTCCGCAAGCAATGTCAGGGGTGAATGCATCAAATTCATCTTCACTTGAACGCCCTAATGGCGATTCAGAATCCAGTGAAGATCAATCTTTGTCCAATAATGGGTTGAATGAGGAAGACGATGATGCCACCAAAGAATCGCAACCCACTGCTCCTAATCAATCAGGAAATTATGGACAAGAGCACCAAGCCATGCTGCATTCTTCATCTTCTGCACCTTCTAGGCGTGATGACTGCCTTACACATGCTCCACAACTGGAACTTATTGGCCCTTCATTTGGATATGCTCCTTTTATTGGAATGCCTCATGCCAGAATGGCTTTGCCGCTTGAGATGGCTCAAGAGCCCGTGTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAGGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGAGCACGAGGTAATGGAGGGCGTTTTGCAAAGAAAACTGAGGTCGAGGCTTCAAACCACACGAACAAGGAAAAGGATATGGGTGCAGGGCCAGTCCCCTCTGATTCTGCTAAGACCTGGAACTCTCCCAGTGTGCAACAAGACACAAGAGAATCTCAAGTGCATGAGAGATTTGGAAAACACAACTATGCAAATGTATTGCAGTCATCATCTGCGTTTTGTTTGCACTCGGGTGAGAGAGTTGAGGAAGGGGACTGTTCAGGTCAACAAAGGGGAAGCATCTCGTCTGAGCAAACCTCACAGAGGCGTCTTGCTATTCAGTAA 915 0.4546 MQSKSETANQPRSNPHSFAPNNVYSEPWWRGIQYNSVPQAMSGVNASNSSSLERPNGDSESSEDQSLSNNGLNEEDDDATKESQPTAPNQSGNYGQEHQAMLHSSSSAPSRRDDCLTHAPQLELIGPSFGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASNHTNKEKDMGAGPVPSDSAKTWNSPSVQQDTRESQVHERFGKHNYANVLQSSSAFCLHSGERVEEGDCSGQQRGSISSEQTSQRRLAIQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00110 304 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 262 IPR001289 GO:0003700|GO:0006355
Phco3g00110 304 MobiDBLite consensus disorder prediction 213 251 - -
Phco3g00110 304 MobiDBLite consensus disorder prediction 40 73 - -
Phco3g00110 304 MobiDBLite consensus disorder prediction 83 112 - -
Phco3g00110 304 MobiDBLite consensus disorder prediction 40 114 - -
Phco3g00110 304 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 151 206 IPR001289 GO:0003700|GO:0006355
Phco3g00110 304 Gene3D - 149 211 - -
Phco3g00110 304 ProSiteProfiles NF-YA/HAP2 family profile. 149 209 IPR001289 GO:0003700|GO:0006355
Phco3g00110 304 SMART cbf3 148 209 IPR001289 GO:0003700|GO:0006355
Phco3g00110 304 MobiDBLite consensus disorder prediction 276 304 - -
Phco3g00110 304 ProSitePatterns NF-YA/HAP2 subunit signature. 154 174 IPR018362 GO:0003677|GO:0016602
Phco3g00110 304 PRINTS CCAAT-binding transcription factor subunit B signature 152 174 IPR001289 GO:0003700|GO:0006355
Phco3g00110 304 PRINTS CCAAT-binding transcription factor subunit B signature 183 206 IPR001289 GO:0003700|GO:0006355
Phco3g00110 304 MobiDBLite consensus disorder prediction 285 304 - -
Phco3g00110 304 MobiDBLite consensus disorder prediction 1 24 - -
Phco3g00110 304 MobiDBLite consensus disorder prediction 1 21 - -
Phco3g00110 304 MobiDBLite consensus disorder prediction 232 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00110 Phco-Chr3 721868 723800 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phco3g00110 CBFB_NFYA 1e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01797 11 14337198 14341333 Phco3g00110 3 721868 723800 PCT