Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00081 ATGTCTGTGAATCGAAAGCCTCCTGCTTCGAATGGTAGATTACCATCGAATATGAAGTCTTGGAAGGTGAATGAGCCTCTGCATGGGTCTAATTCTCCCAGGACATGTAGGAGAAAACCCTTGCTCCTTTGGTTCTTTAGCTTTGTTGCCATAGGGAGTATTTGGTTTATCTTGAGTTTCGATAGTAAGTATTTGGTGAACAAGGAGAATGAAGCAATTTGTGAAAAAAGAGCAAGAATCTTGCTACACCGTTACAATGTTAGTAGGGAACAGATTTATGCTTTGGCCTCCTTGTTCCCTGGATCAGATCAGATTTTATTCAACTGTATTGATGAAAGAAGACTTCGGATGCTGTTAAGGAGTGGCATGGTCAACATTCCACAGTTAATGTGTCCAGAGAATGAGGAGTTAAAAAAGGAGCGTATATGTGTAGCGGACACTGTAGAACCTATCGAACAATGTCCAATTCTCAATGATTATGTCCAGGCAAGACTTGAATTATCATTCCCATTCAAAAATTATGTATCATTGGCCTCGGGCACTGCGCTTTCGACTGATTTGGTTAGTTATTTACTCCGTGGAAAGAGCATTGTGCAACCGTTGGAACTGAGGGTATCTGCAATTTGGGGTCATGTGAGTTCATCTAATTTAACTAAAGGATTCTGGTGGGTCCTTATTGGAATTGTAATGTCCTACTTCTGTTCACTATGGAGGAATCAAAAGCAGAAGCTAGTTCAGGGGCATCCCGCCGCACAACAAAAGCGGCTGAAGCATTTTCCACGGGGTCCTTCAAGGGGTGCTGGGAGGTGGAGGAAAAAGTTACTAGTTATATTTGTGTCACTTGGAATATTTGGGTCCTTTTGGTTATTTTGGCACCTAAATATGGACATCATGCAGAGAAGAGAAGAAATGCTAACCAATATGTGTGATGAGAGAGCCCGTATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCTACATTTCACCATGATAAACATCCTTCTGCAATCGACCAGAAAATTTTTGGAGAATATACTGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTTCATTCAGATAGGATGCATTTTGAGAAACAGCATGGGTGGACAATTAAGAAAATGGAAACAGAGAATGAGGCATTAGTCCAAGATAGCATTCCTGGAAATTTGGATCCAGCACCCATTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGTGAGAATATTTTGCGAGCAAGGGCATCTGGAAAGGGGGTTCTCACATCCCCTTTTAAACTACTAAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTATAACACTAATCTTCCTTTAGATGCTACTCCAGAGCAACGTATTGAAGCGACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCATTGGTGGACAAGCTTCTCCATCAACTCGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGACACAACTGATGCATCTGCACCTATCACAATGTATGGTACTGATGTTACTGACACTGGCCTACTACGCATAAGCAGCCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCAGGGGGGGTGTTTGTTATTACTTTGCTTGTGGGTCATATTTTTTATGCAGCAATAAATAGAATAATAAAAGTTGAGCATGACTGTAGTGTAATGAGTAAGCTGAAAAGTTGTGCTGAGGCTGCAGATGTGGCAAAATCCCAGTTTCTTGCTACAGTTTCACATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGAGCTCGATAAAAGACAGATGGATTATGCCCAAACTGCACATGATAGTGGTAAAGATCTCATATCAGTCATAAACGAGGTTCTTGATCAGGCTAAGATTGAGGCTGGAAAGCTTGAACTTGAAGCTGTAGCTTTTGACCCACGTGCTATTCTGGATGAAGTTTTATCTCCTTTCTCTGAAAAATCTAAAGTAGTAGAGCTGGCTGTTTATGCATCCAATCATGTACCTCAAGTTGTCATTGGTGATCCTAAACGATTCCGGCAAGTAATTACAAATCTTGTCAGCAATTCAGTCAAGTTCAATCATGATAAAGGACATGTGTTTGTCTCTGTTCATCTGGCAAATGAAGTGAAGAACCCACTTCATATTATGGATGCAGTGCTGAGTGAAGGCTTCAACATCAATCAGGACATATCAAACAGAACATATGATACATTAAGTGGGTTTCCTGTATGCAACAAATGGAAAAGTTGGGCAAATTTTGAGAAGTTAAGTAGCACAGATGATCCTGAAATTATTCAATTATTAGTAATAGTTGAGGACACAGGTACAGGAATTCCTACAGATGCACAAAGCCGAATATTCACACCTTTTATGCAGGCTGATAGTTCCCCCTCCCGAACGTATGGTGGAACTGGAATTGGGCTGAGCATTAGTAAATGCTTAGTTGACCTCATGGGAGGTGAAATTGGATTTGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCCTTTACTGGAACTTTCAGAAAAGGAGAAAGCACGTCTCTAGATGCAATGTGGCAGAATAATAATTTTGGTTCAGAGTTCCAAGGATTGAGAGCATTAGTGGTAGATAGAAGAAAAATCCGAGCTGAGGTCACAAGATATCATCTGCAGAGATTAGGAATGTCTGTGGATATAACTAATAGTCTGAATTCTGCATGCTCTTGTCTATCTAATACTTGCAACATGAGTACGTCAAACCAGTTGGCCATGATTTTGATAGACAGGGATACTTGGGATAAAGAATGTCTTATCTTATGCAAAATCAGGAAGCTTAGACAGAATGGCATCAAAAGGGATCCAATTTTACCGAAGATTTTTCTCCTGGACGCCCACCCTAGCATTGATGAACATGCTGAGCTGAAGTCAGTTGGTATAATCGATGATATACTAAAGAAGCCTCTTTGGCTTAGTTCGTTGGTTCAATCTTACAAAGAATCCCTTGGCACTGAAAAAAATGAAGTAAATAGGAAGAAAGTATCCAAACTTGGAAGTTTATTAATGAACAAACAAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAGAGTTGCAAAAGGTTTTCTACAGAAATATGAGGCAAAAGTTACTTCTGTGGAGAGTGGCATGGCTGCTCTAAAGGTGCTTAAACTGCCACATAATTTTGATGCTTGTTTTATGGATCTCCAAATGCCAGAAATGAATGGTTTTGAAGCAACAAGGGAAATCCGCCGACTGGAGAGCGAGGTAAATGAGAAAATTGCGTGTGGGCAAGCATCTGCAGAGATGTATGGTAACATCTCTTATTGGCACATTCCAGTACTAGCAATGACAGCAGATGCAACTCAGAGTTCAAGTGAAGAGTGCAGAAATTGCGGAATGGATGACTACGTGACGAAGCCATTTGAAGAAGAGCAGCTCTATACGGCAATGGCACATTTCTTCTTGCCAGATTCATAG 3669 0.4077 MSVNRKPPASNGRLPSNMKSWKVNEPLHGSNSPRTCRRKPLLLWFFSFVAIGSIWFILSFDSKYLVNKENEAICEKRARILLHRYNVSREQIYALASLFPGSDQILFNCIDERRLRMLLRSGMVNIPQLMCPENEELKKERICVADTVEPIEQCPILNDYVQARLELSFPFKNYVSLASGTALSTDLVSYLLRGKSIVQPLELRVSAIWGHVSSSNLTKGFWWVLIGIVMSYFCSLWRNQKQKLVQGHPAAQQKRLKHFPRGPSRGAGRWRKKLLVIFVSLGIFGSFWLFWHLNMDIMQRREEMLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHDKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDSIPGNLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTDASAPITMYGTDVTDTGLLRISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASGGVFVITLLVGHIFYAAINRIIKVEHDCSVMSKLKSCAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDKRQMDYAQTAHDSGKDLISVINEVLDQAKIEAGKLELEAVAFDPRAILDEVLSPFSEKSKVVELAVYASNHVPQVVIGDPKRFRQVITNLVSNSVKFNHDKGHVFVSVHLANEVKNPLHIMDAVLSEGFNINQDISNRTYDTLSGFPVCNKWKSWANFEKLSSTDDPEIIQLLVIVEDTGTGIPTDAQSRIFTPFMQADSSPSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGESTSLDAMWQNNNFGSEFQGLRALVVDRRKIRAEVTRYHLQRLGMSVDITNSLNSACSCLSNTCNMSTSNQLAMILIDRDTWDKECLILCKIRKLRQNGIKRDPILPKIFLLDAHPSIDEHAELKSVGIIDDILKKPLWLSSLVQSYKESLGTEKNEVNRKKVSKLGSLLMNKQILVVDDNAVNRRVAKGFLQKYEAKVTSVESGMAALKVLKLPHNFDACFMDLQMPEMNGFEATREIRRLESEVNEKIACGQASAEMYGNISYWHIPVLAMTADATQSSSEECRNCGMDDYVTKPFEEEQLYTAMAHFFLPDS 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00081 1222 PRINTS Bacterial sensor protein C-terminal signature 890 903 IPR004358 GO:0016310|GO:0016772
Phco3g00081 1222 PRINTS Bacterial sensor protein C-terminal signature 866 884 IPR004358 GO:0016310|GO:0016772
Phco3g00081 1222 PRINTS Bacterial sensor protein C-terminal signature 849 859 IPR004358 GO:0016310|GO:0016772
Phco3g00081 1222 PRINTS Bacterial sensor protein C-terminal signature 831 845 IPR004358 GO:0016310|GO:0016772
Phco3g00081 1222 FunFam Histidine kinase 4 346 573 - -
Phco3g00081 1222 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 621 693 IPR036097 GO:0000155|GO:0007165
Phco3g00081 1222 FunFam Histidine kinase 4 599 690 - -
Phco3g00081 1222 CDD HisKA 627 688 IPR003661 GO:0000155|GO:0007165
Phco3g00081 1222 SUPERFAMILY CheY-like 924 1056 IPR011006 -
Phco3g00081 1222 ProSiteProfiles Response regulatory domain profile. 929 1058 IPR001789 GO:0000160
Phco3g00081 1222 Gene3D - 918 1072 - -
Phco3g00081 1222 ProSiteProfiles CHASE domain profile. 342 566 IPR006189 -
Phco3g00081 1222 Gene3D - 1075 1219 - -
Phco3g00081 1222 SMART HisKA_10 627 692 IPR003661 GO:0000155|GO:0007165
Phco3g00081 1222 MobiDBLite consensus disorder prediction 1 33 - -
Phco3g00081 1222 Pfam His Kinase A (phospho-acceptor) domain 627 692 IPR003661 GO:0000155|GO:0007165
Phco3g00081 1222 SMART HKATPase_4 737 906 IPR003594 -
Phco3g00081 1222 PANTHER TWO-COMPONENT HISTIDINE KINASE 265 1211 - -
Phco3g00081 1222 CDD HATPase_EvgS-ArcB-TorS-like 742 901 - -
Phco3g00081 1222 SUPERFAMILY CheY-like 1079 1216 IPR011006 -
Phco3g00081 1222 Gene3D - 293 345 - -
Phco3g00081 1222 Gene3D - 64 101 - -
Phco3g00081 1222 ProSiteProfiles Response regulatory domain profile. 1081 1218 IPR001789 GO:0000160
Phco3g00081 1222 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 681 901 IPR036890 -
Phco3g00081 1222 SMART REC_2 1080 1214 IPR001789 GO:0000160
Phco3g00081 1222 CDD REC_hyHK_CKI1_RcsC-like 1082 1214 - -
Phco3g00081 1222 ProSiteProfiles Histidine kinase domain profile. 634 906 IPR005467 -
Phco3g00081 1222 MobiDBLite consensus disorder prediction 1 31 - -
Phco3g00081 1222 SMART CHASE_2 342 541 IPR006189 -
Phco3g00081 1222 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 737 901 IPR003594 -
Phco3g00081 1222 Gene3D - 691 907 IPR036890 -
Phco3g00081 1222 Pfam Response regulator receiver domain 1082 1214 IPR001789 GO:0000160
Phco3g00081 1222 Gene3D - 602 690 - -
Phco3g00081 1222 Gene3D CHASE domain 346 573 IPR042240 -
Phco3g00081 1222 Pfam CHASE domain 345 539 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00081 Phco-Chr3 518332 526748 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco3g00081 CHASE 1.1e-33 CL0165