Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00079 ATGCAGGCATCTGAGCAACGTAGAAGTTCAAGCATGTACTATCAACCATTACAACAAATTGAAGCCTACTGCTTGCCGCAGTATCGGAGTCTAAATCAACAGCTATACTACCATGATGGAGGCCATGGAACTCACTTTTCAACTCCAAGTTCTTCTGAACTTTACTGTACATTGGAGTCATCTTCTGTAGCCGGCAGTTTCACCCTTTACAACTCCCCTTCAACTGTTAATTTCTCACCGAATGGTAGCCCCATATCGCAGCAAGACTCTCACTCATATCCACCTGACCAGTATCATTCCCCTGAGAATACCTACGGCTCTCCATTGAGTGGCTCCTGCATAACCGATGATTTAAGCAACTTCAAGCACAAACTGAGAGAGTTGGAAAGTATAATGCTTGGCCCTGACTCTGATAATCTTGATAGTTATGACAGTGCCATAAGCAATGGAAACAACTTTGCTTCACCTGAGATGGACAGTTGGAGACAAACAATGGTGGCAATTTCTAGCAAGAACCTGAAGCACATCCTTATTGCATGTGCCAAAGCCATTGCAGACAATGATTTACTCATGGCACAGTGGCTGATGGATGAATTAAGGCAGATGGTGTCAGTTTCTGGCGATCCAATTCAACGATTGGGAGCATACATGCTGGAAGGACTTGTTGCACGATTGGCTGCTTCTGGGAGTTCAATATACAAAGCTTTAAGATGCAAAGAACCAGAAAGTGCTGAGCTTCTCTCCTACATGCACATACTGTATGAGGTTTGCCCCTACTTCAAATTTGGGTACATGTCTGCAAATGGAGCCATCGCAGAAGCTATGAAAGATGAAGACCGGGTGCACATAATTGATTTCCAAATTGGTCAAGGAAGCCAGTGGATCACTTTAATTCAGGCTTTTGCAGCTAGACCTGGAGGGCCACCCCACATTCGGATTACAGGTATTGATGACTCACAATCAGCTTATGCCCGCGGTGGTGGACTGCACATAGTGGGAAGGAGGTTATCAAAGCTTGCTGAGCATTTTAAGGTGCCGTTCGAATTTCATGCTGCAGCTATCTCTGGTTGTGATGTTCAAGTACATAACCTTGGAGTTCGACGGGGGGAAGCTCTAGCTGTGAATTTTGCGTTCATGCTACATCACATGCCAGATGAAAGTGTGAGTACTCAGAATCACAGGGACAGGCTGTTGAGGTTGGTTAGGAGCCTATCGCCAAAGGTGGTGACACTTGTCGAGCAGGAATCTAACACAAACACTGCTGCATTCTTTCCACGTTTCCTTGAAACTCTGGACTATTACACAGCAATGTTTGAGTCAATAGATGTGACTCTTCCCAGAGATCATAAAGAGAGAATCAATGTTGAGCAGCATTGTTTGGCAAGAGATTTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGGGTGGAACGGCATGAGGTGCTTGGGAAGTGGAGGTCAAGATTTGCAATGGCCGGTTTCACTCCTTACCCTTTGAGTTCACTGGTGAATGGTACCATTAAGAAATTGCTTGATAACTACAGTAATAGATATAGACTTGAAGAGAGAGATGGAGCTCTTTATCTGGGTTGGATGAATAGAGATTTGGTTGCTTCTTGCGCATGGAAATGA 1632 0.4461 MQASEQRRSSSMYYQPLQQIEAYCLPQYRSLNQQLYYHDGGHGTHFSTPSSSELYCTLESSSVAGSFTLYNSPSTVNFSPNGSPISQQDSHSYPPDQYHSPENTYGSPLSGSCITDDLSNFKHKLRELESIMLGPDSDNLDSYDSAISNGNNFASPEMDSWRQTMVAISSKNLKHILIACAKAIADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYKALRCKEPESAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSQSAYARGGGLHIVGRRLSKLAEHFKVPFEFHAAAISGCDVQVHNLGVRRGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRDHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLDNYSNRYRLEERDGALYLGWMNRDLVASCAWK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00079 543 Pfam GRAS domain family 173 543 IPR005202 -
Phco3g00079 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 149 537 IPR005202 -
Phco3g00079 543 ProSiteProfiles GRAS family profile. 164 543 IPR005202 -
Phco3g00079 543 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00079 Phco-Chr3 502609 504240 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco3g00079 GRAS 8.1e-139 CL0063