Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00078 ATGGTTTCTTCAGACAAAAGTGTAGATCAAAATATCCCTTCTGATAAATTGCAGCATAGAGCGAGTCCTGATAGTGATGTTACATTGTCACAAGGTCATGATACTAAAAATGATCTGTCCAAACCAGAGGGAGCAACAAGTACTCCTTCTGTTGTAGCTAAAAATGAAGAGGGGAAGGACTCTGATGCTACTGCTTGTGCACTGGAATCAGATCAAGAAGGAAGCACGTGCTCATTACCACTTGAGAAACATTTGCAGAGCCCTGATACTCTTTTGAATGAATTGCCTCCATTGCAATTCAGTCAGGAAAGTCCCTCTGTAATACGTGAAAAGGTATCTAAAGATGGCTATAACTGGCGAAAATATGGTCAGAAACACGTCAAGGGGAATGAATTTATACGGAGCTATTACAAGTGTACATATCCAAACTGCCAGGCAAAAAAGCAATTGCAGCAGTCTAATAATGGGAATATCACAGATTGTGTTTGTATCGGACAGCATAATCATCCTAGGCCTCAATTGAACTCCACAGTATCAGTTGAGTGTGTTTTGCCGGTTGTGGAACAAGCAGCACGCAAGTCCTTGTTAGCCAGTGTGAAAGACAAAACATCCGTTGAGCAAGGATGCATGCCTCAACAGATCAAGCCTTTACAGTCCTTTCCAACTACACAAGTGTCCCCAGTCAATGAGTTGAAAGCTGCACATTTACAATTGTCTAAGGCAAGAAATCAGGTTCATGACAACGAGGATCCTGAGTCAAAGCGACTGAAGAAAGACAATAGTAATGTGGATGGCACTGGAGTTAACATGTCAACTCGTGAATCTCGTATTGTAGTTCAGACTTCAAGTGAGGTTGATTTAGTAAATGACGGGTATCGCTGGCGCAAATATGGGCAGAAGCTAGTTAAAGGGAATGCAAACCCAAGAAGTTATTACCGATGCTCAAATCCTGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAGGGACAACATGATCATGAACTTCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATATGCACTCAACGACCATGAATGGCAAGGCAGGAACCAAATCTGAAGATACTGTTAATAGAGGGGAACAAAGTGGCTTGGACTCACCAAGCAAATTAACAGAGCAACTAAATGGCAAGTCAACTACTAAGTCAAAGGTCGATGATATGGTTGACTTTGGCGGGATCAGCCTTTCTAATGAGGGTCCTGAAATTAAATTAAAGGAGGAACAACAAAAAGATAACTCAGGTACTAAAGACAATTCTGTCAGCAATGATGTTGTATGCCATTCTAGTGCTGGAGTTCCGTGTAGATCAAATGAACAGCTGAAAGGTGAGGTAAAACCTTTATCAGAAGGAACTAAGGATTGCCTTAGCAAGGTTGCCATTCATGATACCCCCAGTACAGAAAGCGAATTTAATAAGCAATCAGCACCTGATGCAGAACCGGTCCAAAGCTAA 1518 0.4183 MVSSDKSVDQNIPSDKLQHRASPDSDVTLSQGHDTKNDLSKPEGATSTPSVVAKNEEGKDSDATACALESDQEGSTCSLPLEKHLQSPDTLLNELPPLQFSQESPSVIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTYPNCQAKKQLQQSNNGNITDCVCIGQHNHPRPQLNSTVSVECVLPVVEQAARKSLLASVKDKTSVEQGCMPQQIKPLQSFPTTQVSPVNELKAAHLQLSKARNQVHDNEDPESKRLKKDNSNVDGTGVNMSTRESRIVVQTSSEVDLVNDGYRWRKYGQKLVKGNANPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHELPPGRTVTHNAATNMHSTTMNGKAGTKSEDTVNRGEQSGLDSPSKLTEQLNGKSTTKSKVDDMVDFGGISLSNEGPEIKLKEEQQKDNSGTKDNSVSNDVVCHSSAGVPCRSNEQLKGEVKPLSEGTKDCLSKVAIHDTPSTESEFNKQSAPDAEPVQS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00078 505 Gene3D WRKY domain 275 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g00078 505 SMART WRKY_cls 113 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00078 505 SMART WRKY_cls 288 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00078 505 MobiDBLite consensus disorder prediction 242 261 - -
Phco3g00078 505 MobiDBLite consensus disorder prediction 1 54 - -
Phco3g00078 505 FunFam WRKY transcription factor 102 173 - -
Phco3g00078 505 FunFam WRKY transcription factor 57 274 348 - -
Phco3g00078 505 MobiDBLite consensus disorder prediction 362 505 - -
Phco3g00078 505 MobiDBLite consensus disorder prediction 483 505 - -
Phco3g00078 505 Pfam WRKY DNA -binding domain 114 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00078 505 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00078 505 SUPERFAMILY WRKY DNA-binding domain 280 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g00078 505 MobiDBLite consensus disorder prediction 362 403 - -
Phco3g00078 505 Gene3D WRKY domain 102 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g00078 505 ProSiteProfiles WRKY domain profile. 108 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00078 505 SUPERFAMILY WRKY DNA-binding domain 109 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g00078 505 MobiDBLite consensus disorder prediction 241 271 - -
Phco3g00078 505 MobiDBLite consensus disorder prediction 1 62 - -
Phco3g00078 505 ProSiteProfiles WRKY domain profile. 283 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00078 505 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 67 366 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00078 Phco-Chr3 498568 500942 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g00078 WRKY 2.8e-25 CL0274