Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00025 ATGGGTTGCTGCCAATCGTCGATGCTGCTGCGAGTGGGGGAGAGGGAGACTCACCCTGAAAAGGAAAAGGAAAGGGAAAAGGAAAAGGAGAAGGAAAGGGAAAGGGTAAAGGAGAAGGAGAAAGACCAGCCCTACGGAACCCATCACAGGGTTTCTGCTGGAGACCCTCACGGTGACCCTGACAAAGAGGGGGTCGATTTCTCCTTCGCCGAGTTCTCTCTCCCGGAGCTCAAGGCGGCCACCAACAATTTCAGTTCAGATTATATCGTCTCCGAGAGTGGCGAGAAGGCGCCCAACCTCGTCTACAAGGGTCGCCTCCACAACCAGAGCCGTTGGATTGCTGTCAAGAAGTTCAGCAAGGCTGCCTGGCCGGATCCCAAGCAGTTCGTCGAAGAGGCTTCCGGCGTTGGCAAGTTGCGCCACCCAAGGCTCGCTAATTTAATCGGTTACTGCTGCGACGGCGATGAGAGGCTCCTCGTTGCCGAGTACATGCCCAATGACACTCTCGCCAAGCATCTTTTCCACTGGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGGGTGGCTCTGTACATCGCACAGGCTTTGCATTATTGCAGTTCAGAGGGGCGCCCCCTGTACCACGACTTGAATGCTTACCGTGTTCTCTTCGACCAGGAAGGTGATCCTCGTCTCTCTTGTTTCGGTTTTATGAAGAACAGCAGGGATGGCAAGAGTTATAGCACCAATCTTGCTTATACACCTCCTGAATATTTAAGAAACGGAAGGGTCACCCCAGAAAGTGTCATTTACAGCTTTGGAACTGTCCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCATGCACTTGATATGATACAGGGGAAGAACAATATGCTCTTAATGGATTCGCATTTGGAGGGAAAGTTTTCAACAGAAGAAGCGATAGTAGTAGTTAATCTTGCCTCCAAATGCTTGCAATATGAACCGAGGGAGCGGCCTGACACAAAGGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGATGTTCGTTCTCACATCATGCTTGGAATTCCAAAGCACGAGGAAGCTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGAGAGGCCTGTTCAAGAATGGACCTAACTGCAATACATCAGATCTTGGTTGCGACACACTACAGAGATGATGAAGGAACTAATGAGCTGTCGTTCCAAGAGTGGACTCAACAAATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAAGACTTCAAGATAGCCATTGATAACTATTCCCAGTTTATTGACGTGGGAACGATGGTCTCCCCAACTGTTTTTGCAAGACGCAGTCTATGCTATCTGCTATGTGATCAACCAGATCCTGCGCTACGCGACGCAATGCAAGCACAGTGCGTTTATCCAGACTGGCCCACGGCTTTCTACATGCAATCAGTTGCTCTTGCAAAGCTGGACATGCACAAGGATGCGGCTGATATGTTAAACGAGGCAGCTGCATTGGAAGAGAAGAGACAAAGAGGAGCGAGATGA 1569 0.5022 MGCCQSSMLLRVGERETHPEKEKEREKEKEKERERVKEKEKDQPYGTHHRVSAGDPHGDPDKEGVDFSFAEFSLPELKAATNNFSSDYIVSESGEKAPNLVYKGRLHNQSRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWETQTIEWAMRLRVALYIAQALHYCSSEGRPLYHDLNAYRVLFDQEGDPRLSCFGFMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEAIVVVNLASKCLQYEPRERPDTKDLVTTLAPLHTKPDVRSHIMLGIPKHEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKIAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQRGAR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00025 522 Coils Coil 20 42 - -
Phco3g00025 522 FunFam probable serine/threonine-protein kinase At4g35230 413 522 - -
Phco3g00025 522 Pfam Protein tyrosine and serine/threonine kinase 101 339 IPR001245 GO:0004672|GO:0006468
Phco3g00025 522 FunFam probable serine/threonine-protein kinase At4g35230 60 163 - -
Phco3g00025 522 Gene3D Phosphorylase Kinase; domain 1 60 163 - -
Phco3g00025 522 SUPERFAMILY Protein kinase-like (PK-like) 68 343 IPR011009 -
Phco3g00025 522 FunFam probable serine/threonine-protein kinase At5g41260 165 356 - -
Phco3g00025 522 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 26 519 IPR045845 GO:0004672|GO:0009742
Phco3g00025 522 ProSiteProfiles Protein kinase domain profile. 87 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00025 522 SUPERFAMILY TPR-like 416 517 IPR011990 GO:0005515
Phco3g00025 522 MobiDBLite consensus disorder prediction 13 65 - -
Phco3g00025 522 Gene3D Tetratricopeptide repeat domain 413 521 IPR011990 GO:0005515
Phco3g00025 522 MobiDBLite consensus disorder prediction 1 65 - -
Phco3g00025 522 Gene3D Transferase(Phosphotransferase) domain 1 165 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00025 Phco-Chr3 246210 251654 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Phco3g00025 PK_Tyr_Ser-Thr 3.2e-26 CL0016