Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00017 ATGGAATATGGTGGGTTTGGGAGCTTGTGGGACTGTGGTTCGGCCTCGGAAGAAGATTCGATTGAGGAGCTGCTGGTAGAAGGTTGCTGGGTGGAAACGAGTGGAGTTGGGAGTTGCGAGGGTCAGTACATGGGAAGTTCAGAAGCGGAGATGGAGATGGAGGTGAGGAAGAGATGGTGGATTGGACCCAAGGCTAATTCCTCCGTGAAAGAGAGACTAGTGTTGGCTGTGGGGTATATGAGGGAATGCACAAAGAACGCCAACGTGGTGATTCAGGTGTGGGTTCCCTTACGGAGAGGGCTTGTGGGTGGGCCTGAGAACCTTAGGAGAAATCCAGATGAGTGGGTTTCAGTTGAGATGAACATGAACATGAACATGAACATGAACATGAACATGAACAGCGCAAGGGACGTAAGCCTTCGGTTCTATAGAAGCCAGGAGTACCCTCGGGTTCCTTATTATGTGGACGTACCTGGTTCTTTAGCCCTCCCTGTGTTAGAAAGAGGCACCGACACATGCCTCGGTGTCATCCTCATTCTAATGCCTCCCTACGACACCATCAACTATTGCCCGCAACTTGTTAACAATAATCTTCTCTGCAATTCTTTCCAGGTATTCGAGGAGGTGTACGAAGCTGCAGTGAATGAGATGGCGGAGGTGATGAAGTGTGTGTGCAGGGCGCAGAATGTGGCATTGGCTCTCACATGGGCTCCTTGTTGCATCCAACAGGGAGGGAAGTGTGGCTATGGCCATTCCACGGAGACTCACTTCTCAACAGTGGAGAGAGCGTGTTTTGTGGGAGATGCCCAAGCACTTCCCTTCAAGGACGCCTGCTCTCAGCATCACCTCTTGCGTGGACAGGGAATCGTAGGCACAGCCTTCACAACTTCCAAGCCCTGCTTTGCGATCGACATAGCCGCCTTCACCAGAGCCCAATATCCTCTGGCTCACCACGCCAACATCTTTGGCCTGCATGCTGCCGTCGCCATTCCTCTAAGGACCCTCTACACCGACTTTGTCGTCGAGTTCTTCCTTCCTAAGGATTGCCATGACAGGGAACACCAAAACCACTTCCTCAACTCCATATCCCTGCTCCTTCAGCAGTCTTGCCGGAACTTGCATGTTGTCATGGGGGATGAGTTCACATTGCCGCCGCCGCCACCACCGCCGCAGCCATACCTTAGTAATAAAGAGGAAATAGTTGTGAGTGAGAAATTGGAATCCCAGTGGCAGGCAGAAGCGTGCGGGTCGTGGATTGCGCACATGATGGAGGCCCAGGCTCAGGAGCAGAAGGGGAAAGGAGTGTGCGTGTCGTTGGAATACCTGGAAGAGGCGAAAGAGGAGTTCAAAGTGACAGGCAAGTGCAGGTGGGAGAGTGGCAGCGGTGGTGCTTACGAGGCAGCAGATTTACATGAGCAGCAGGTGTTTGGCGATGAATCTCAGACTCTGACTCAAACTCAGACTTTTGGTGGGCGACGTGGCAGAAAGTCCGGGGAGAAGAGGCGTACAAAGGCGGAGAAGACTATCAGTCTGCCAGTTCTGAGACAGTACTTTGCCGGAAGCCTGAAAGATGCGGCAAAGAGCATCGGAGTGTGTCCCACAACTCTGAAAAGGATATGCAGACAGCACGGGATCACGAGGTGGCCTTCGAGGAAGATAAAGAAGGTAGGCCACTCTTTGAAGAAGCTTCAGCTTGTGATCGATTCAGTACAGGGTGCCGAGGGTGCCATTAAGATCGGTTCCTTCTACAACAGTTTTCCAGAGTTGAGCTCTGCCACCTCTCACTCATCCATTCCCAACTCCAACAACAATAATAACACCACCAACAACAACTCCTCCTCCTTCTACGGCCATTCTCCACCCTCATCCTCCTCTCCTTCCACCGCGCCTCCTCAACACCAACACCAACACTTGTACTTGAGCACACCCAACGTCTCCCAAACAAGTTGCACGGCTGCACCTCTGAGGGTGAAGGCTAGTTTTGGGGATGAAAAAATCCGCTTCAGCCTGCAACCGAAGTGGGGGTTCAGAGAATTGGAGGTTGAGATTGGAAGGCGTTTCAATGTGAAGGATGTGGGGAAGGTGGTGGTGAAGTATTTGGATGATGAAGGAGAGTGGGTTGTTTTAGCCTGCGATAGTGATCTGGAGGAATGCAAAGACTTGCACACAACCTATGAGAGCCGCACCATTAGACTTGCCCTATTTCAACCTTCTTCTTCTCCTTAA 2226 0.518 MEYGGFGSLWDCGSASEEDSIEELLVEGCWVETSGVGSCEGQYMGSSEAEMEMEVRKRWWIGPKANSSVKERLVLAVGYMRECTKNANVVIQVWVPLRRGLVGGPENLRRNPDEWVSVEMNMNMNMNMNMNMNSARDVSLRFYRSQEYPRVPYYVDVPGSLALPVLERGTDTCLGVILILMPPYDTINYCPQLVNNNLLCNSFQVFEEVYEAAVNEMAEVMKCVCRAQNVALALTWAPCCIQQGGKCGYGHSTETHFSTVERACFVGDAQALPFKDACSQHHLLRGQGIVGTAFTTSKPCFAIDIAAFTRAQYPLAHHANIFGLHAAVAIPLRTLYTDFVVEFFLPKDCHDREHQNHFLNSISLLLQQSCRNLHVVMGDEFTLPPPPPPPQPYLSNKEEIVVSEKLESQWQAEACGSWIAHMMEAQAQEQKGKGVCVSLEYLEEAKEEFKVTGKCRWESGSGGAYEAADLHEQQVFGDESQTLTQTQTFGGRRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIKIGSFYNSFPELSSATSHSSIPNSNNNNNTTNNNSSSFYGHSPPSSSSPSTAPPQHQHQHLYLSTPNVSQTSCTAAPLRVKASFGDEKIRFSLQPKWGFRELEVEIGRRFNVKDVGKVVVKYLDDEGEWVVLACDSDLEECKDLHTTYESRTIRLALFQPSSSP 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00017 741 MobiDBLite consensus disorder prediction 486 505 - -
Phco3g00017 741 CDD PB1_NLP 655 736 IPR034891 -
Phco3g00017 741 SMART PB1_new 654 737 IPR000270 GO:0005515
Phco3g00017 741 MobiDBLite consensus disorder prediction 593 636 - -
Phco3g00017 741 Pfam PB1 domain 655 736 IPR000270 GO:0005515
Phco3g00017 741 ProSiteProfiles PB1 domain profile. 654 737 IPR000270 GO:0005515
Phco3g00017 741 SUPERFAMILY CAD & PB1 domains 650 739 - -
Phco3g00017 741 ProSiteProfiles RWP-RK domain profile. 495 576 IPR003035 -
Phco3g00017 741 PANTHER PROTEIN NLP8 139 734 IPR045012 GO:0003700
Phco3g00017 741 Gene3D - 651 738 - -
Phco3g00017 741 Pfam RWP-RK domain 509 556 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00017 Phco-Chr3 200216 202652 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phco3g00017 PB1 4.1e-13 CL0072