Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00015 ATGGGAAACTGCTGGCCTTCTCCGCCTCATGGCGGCGTAACCCCAACAACCACCGGTAACCTTAGCACAGCCACGCCGGGGACATCTCAGACCATCAGCAGCAGCACCACCAGCTTTACCACTAGCACAACCACAACTACTACTTCTGGAAGTGGGAACAGCTCCATAAATAGCAGGTTCTCGGTGGCAAGCGGTGATCAACCTTATCCAACTGGACAGATCTTACCCGCCTCTAATTTGAGGATTTTCACCTTTGCCGACTTGAGGGCTGCAACTAAGAATTTCAGGGCTGATACAGTTCTTGGAGAGGGAGGTTTTGGAAAAGTCTTCAAGGGTTGGCTTGAAGAGAAGGGCAATTCAAAGAGTGGAAGCGGAACAGTCATTGCCGTCAAAAAACTCAACTCTGAAAGCTTACAAGGAATTGAGGAGTGGCGGTCCGAAGTGAACTTTCTAGGACGCCTTTCCCATCCTAATCTTGTTAAGCTGTTGGGATACTGTTTGGAGGAAACAGAGCTTCTTCTCGTCTATGAATTCATGCAAAAAGGAAGTTTGGAAAACCATCTATTTGGAAGGGGTTCTGCCGTTCAACCACTTCCTTGGGATATCAGGCTTAAGATAGCAATTGGAGCAGCTCGTGGCCTTGCATTCTTGCATACATCCGAGAAAGTAATTTACAGAGACTTCAAGGCCTCAAATATATTGCTTGATGGGTCCTATAACGCAAAGATATCAGATTTTGGCTTGGCAAAGTTGGGTCCTTCAGCTAGTCAATCTCATGTGACAACAAGGGTGATGGGCACATACGGTTATGCAGCTCCTGAATATGTGGCCACAGGGCATCTATATGTGAAGAGTGATGTATATGGGTTTGGAGTTGTTTTGGTGGAAATACTAACAGGGCTACGAGCACTTGATTCGAACCGTCCAAGTGGGCGACATAATCTAACAGACTGGGTGAAACCATACCTGCATGACAGAAGAAAGTTGAAGGGCGTTATGGATTCTCGATTGGAAGGAAAGTTTCCATCGAAAGCTGCATTCCGTATAGCTCAGCTTGCTTTGAAATGTCTTGCATCTGAGCCCAAACAGCGACCATCAATGAAGGAGGTATTGGAGAGTTTGGAGCGAATTCAAGCTGCCAATGAGAAACCTCTGGAGCCTAAATTACGATCTACTCATACTCGTCAAGCCCACCAGGCTGTGCACCATCGTTCTCCACTTAAAGACGGTAGTTACTAG 1239 0.4673 MGNCWPSPPHGGVTPTTTGNLSTATPGTSQTISSSTTSFTTSTTTTTTSGSGNSSINSRFSVASGDQPYPTGQILPASNLRIFTFADLRAATKNFRADTVLGEGGFGKVFKGWLEEKGNSKSGSGTVIAVKKLNSESLQGIEEWRSEVNFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDSNRPSGRHNLTDWVKPYLHDRRKLKGVMDSRLEGKFPSKAAFRIAQLALKCLASEPKQRPSMKEVLESLERIQAANEKPLEPKLRSTHTRQAHQAVHHRSPLKDGSY 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00015 412 CDD STKc_IRAK 101 377 - -
Phco3g00015 412 Pfam Protein tyrosine and serine/threonine kinase 98 374 IPR001245 GO:0004672|GO:0006468
Phco3g00015 412 FunFam Serine/threonine-protein kinase BIK1 63 178 - -
Phco3g00015 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Phco3g00015 412 PANTHER OS01G0588500 PROTEIN-RELATED 43 378 - -
Phco3g00015 412 MobiDBLite consensus disorder prediction 1 64 - -
Phco3g00015 412 ProSitePatterns Protein kinases ATP-binding region signature. 101 132 IPR017441 GO:0005524
Phco3g00015 412 MobiDBLite consensus disorder prediction 381 412 - -
Phco3g00015 412 ProSiteProfiles Protein kinase domain profile. 95 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00015 412 MobiDBLite consensus disorder prediction 10 64 - -
Phco3g00015 412 SUPERFAMILY Protein kinase-like (PK-like) 75 376 IPR011009 -
Phco3g00015 412 Gene3D Phosphorylase Kinase; domain 1 79 178 - -
Phco3g00015 412 Gene3D Transferase(Phosphotransferase) domain 1 179 401 - -
Phco3g00015 412 FunFam Serine/threonine-protein kinase PBS1 179 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00015 Phco-Chr3 168605 171070 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco3g00015 PK_Tyr_Ser-Thr 7.8e-49 CL0016