Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00010 ATGGGCAACACATGCCGCGGATCTTTGAAAGGGAAATATATTCAGGGCTTCAGCCAGCCCGAAGACCACTCCAAGCGCACCACCCTTTCTGATCGCCCCGACTCGGAACACCCCTCCTCAGCCAGACAAAATATCAATTCTTCAGAAAACAACAACACCAACAACATCGTCGTCAACAACAACAACAACAACAACAACAACAATAATCCACCCTTCACCTCCAAGAAAGACTCCATCATGCGCCGCGGCCTTGACAACCAAGCTTACTATGTCTTGGGCCATAAGACTCCCAACATTCGTGATCTATACACTCTTGGCCGCAAATTGGGACAGGGACAATTCGGCACCACTTATTTATGCACCGAGAATTCTACTGCCAATGAATATGCCTGCAAATCCATCTCCAAACGAAAGTTGATTTCCAAGGAGGACGTTGAGGACGTTAGGAGGGAAATTCAGATAATGCATCATTTAGCTGGTCACAGGAACATTGTCACCATTAAGGGTGCTTACGAGGATCCTCTCTATGTGCATATTGTCATGGAACTCTGTTCTGGGGGTGAGTTGTTTGACCGCATCATCCAGAGGGGCCACTATACCGAGAGGAAGGCTGCAGAGTTGACCAAAATTATTGTTGGGGTTGTTGAGGCTTGCCATTCTCTTGGGGTCATGCATAGAGATCTCAAGCCTGAAAACTTTCTGTTGGTCAATAAAGATGATGATTTCTCTCTTAAAGCAATTGACTTTGGCCTCTCCGTTTTCTTCAAACCCGGTCAAGTCTTCACTGATGTAGTCGGCAGCCCATACTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGATGTGTGGACAGCAGGTGTCATACTGTACATATTGCTTAGTGGTGTGCCACCATTTTGGGCAGAGACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGACTCAGAACCTTGGCCTCTAATATCTGACAGTGGAAAAGATCTCATCAGAAAGATGCTGTGTTCTCAGCCTTCAGAACGGTTGAGTGCTCATCAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCACCTGACAGGGCAATAGACCCTGCTGTTCTTTCTCGTCTTAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCATTGCGGGTGATTGCTGAAAGTCTATCCGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTCAGGCTATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTCAAAGCTGGTCTAAGAAGATACGGGTCTACCCTTAAAGATATAGAAATACGTGATCTGATGGAAGCGGCTGATGTGGACAAAAGTGGAACCATAGATTATGGGGAGTTTATTGCTGCTACAGTTCATCTCAACAAACTAGAACGTGAAGAACATCTAATTGCAGCATTCCAATATTTTGACAAGGATGGCAGTGGTTATATTACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGCTTTTCTTGAAGATATTATTAAAGAAGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCCATGATGCAAAAAGGCAATGTTGGAATTGGTAGGAGGACCATGCGCAACAGTCTGAATTTAAGCATGAGAGATGCATCAAGTGCTCAATAG 1701 0.438 MGNTCRGSLKGKYIQGFSQPEDHSKRTTLSDRPDSEHPSSARQNINSSENNNTNNIVVNNNNNNNNNNNPPFTSKKDSIMRRGLDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTANEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHRNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSEPWPLISDSGKDLIRKMLCSQPSERLSAHQVLCHPWICENGVAPDRAIDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDIEIRDLMEAADVDKSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDAFLEDIIKEVDQDNDGRIDYGEFAAMMQKGNVGIGRRTMRNSLNLSMRDASSAQ 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00010 566 FunFam Calcium-dependent protein kinase 5 189 369 - -
Phco3g00010 566 MobiDBLite consensus disorder prediction 1 78 - -
Phco3g00010 566 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Phco3g00010 566 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Phco3g00010 566 Gene3D Phosphorylase Kinase; domain 1 105 188 - -
Phco3g00010 566 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Phco3g00010 566 MobiDBLite consensus disorder prediction 24 38 - -
Phco3g00010 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Phco3g00010 566 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Phco3g00010 566 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Phco3g00010 566 SMART efh_1 408 436 IPR002048 GO:0005509
Phco3g00010 566 SMART efh_1 514 542 IPR002048 GO:0005509
Phco3g00010 566 SMART efh_1 444 472 IPR002048 GO:0005509
Phco3g00010 566 SMART efh_1 480 508 IPR002048 GO:0005509
Phco3g00010 566 ProSitePatterns EF-hand calcium-binding domain. 523 535 IPR018247 -
Phco3g00010 566 SUPERFAMILY EF-hand 385 542 IPR011992 -
Phco3g00010 566 CDD STKc_CAMK 103 360 - -
Phco3g00010 566 SUPERFAMILY Protein kinase-like (PK-like) 82 385 IPR011009 -
Phco3g00010 566 Gene3D Transferase(Phosphotransferase) domain 1 189 370 - -
Phco3g00010 566 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Phco3g00010 566 Pfam EF-hand domain pair 409 469 IPR002048 GO:0005509
Phco3g00010 566 Pfam EF-hand domain pair 479 540 IPR002048 GO:0005509
Phco3g00010 566 ProSiteProfiles Protein kinase domain profile. 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00010 566 PANTHER SERINE/THREONINE-PROTEIN KINASE 95 535 - -
Phco3g00010 566 Pfam Protein kinase domain 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00010 566 MobiDBLite consensus disorder prediction 39 75 - -
Phco3g00010 566 ProSiteProfiles EF-hand calcium-binding domain profile. 476 511 IPR002048 GO:0005509
Phco3g00010 566 SMART serkin_6 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00010 566 Gene3D - 371 543 - -
Phco3g00010 566 ProSiteProfiles EF-hand calcium-binding domain profile. 512 545 IPR002048 GO:0005509
Phco3g00010 566 FunFam Calcium-dependent protein kinase 1 369 543 - -
Phco3g00010 566 CDD EFh 480 540 IPR002048 GO:0005509
Phco3g00010 566 FunFam Calcium-dependent protein kinase 1 105 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00010 Phco-Chr3 127236 132462 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco3g00010 Pkinase 1.1e-72 CL0016