Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00006 ATGATGGATAACGAGGTGTTAGAATTTGATATTGGGTTGGGAGGAGGCGAGGGAGAGTATGACGATGATGGAGGGGACATCGAACACCCAATTGACGAGGATGAATTGGGGGATAGCAGTGGGGGTGGCGCTGTAGCCACTGGAATATATCTTCCCGAGGGGGACCTCTCAGATCTGGAACCTTGCGAGGGCATGGAATTCGAGTCTGAAGAGGCTGCTAAGGCCTTCTACAATTCCTATGCTCGTCGTGTTGGGTTTAGTACTCGTGTCAGCTCATCACGTCGTTCCAGGCGCGATGGAGCTATCATACAGAGGCAATTTGTTTGCGCTAAGGAGGGTTTTCGCAACTTGAATGAGAAGCGCACCAAGGATAGAGAGATCAAGCGCCCCCGAACAATTACAAGAGTCGGATGTAAGGCTTCTTTGTCTGTCAAAATGCAAGACTCTGGCAAGTGGGTCGTGTCTGGCTTTGTTAGAGAACATAATCACGAACTCGTTCCCCCGGACCAGGTTCATTGTCTTCGCTCTCATCGGCAAATATCTGGAGCTGCTAAGACTCTCATTGATACTTTGCAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCAGCACTTATTAAAGAGTATGGTGGGATTAGCAAAGTTGGCTTCACCGAGGTCGACTGTAGGAATTACATGAGGAATAACAGGCAGAGAAGTTTAGAAGGGGACATTCAACTTGTTCTCGATTATTTGAGACAAATGCACTCCGAAAACCCTAATTTCTTCTATGCTGTGCAAGGGGATGAGGATCAGTCTGTAAACAATGTTTTCTGGGCTGATCCCAAGGCAAGAATGAATTATACATTTTTTGGTGATACGGTAACTTTTGACACTACATACCGATCTAATAGGTATCGCTTACCATTTGCTCCCTTTACCGGTGTAAACCATCATGGGCAGCCTGTTCTTTTTGGTTGTGCCTTCCTAATTAATGAATCTGAAGCATCATTTGTGTGGCTTTTCAAGACATGGCTTATGGCCATGTCTGGACGTCCTCCAGTGTCAATAACAACTGATCATGATTCTGTTATTCGATCAGCCATAATACAAGTCTTCCCGGACACCCGGCACCGCTTCTGCAAGTGGCACATCTTTAAAAAATGCCAGGAGAAATTATCTCATATTTTCCTCAAATATCCAAATTTTGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGTCAATTGAGGAATTTGAGTCTTGCTGGTCAACACTAGTAGATAAATATGATATCAGGGACCATGAATGGCTTCAAGCAATATATTCTGCTTGCAGGCAGTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATCACTCAGCGGAGTGATAGCATGAACTCTTACTTTGATGGGTATATAAATGCTTCAACCAATTTAAATCAGTTCTTTAAGCTTTATGAGAAAGCACTTGAAAGTCGCAATGAGAAGGAAGTGAGAGCTGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCAATGGAGAAGCAAGCATCTGAGCTTTACACGAGAAAAATTTTCATGAGGTTCCAGGAGGAGTTAGTTGGTACACTAACATTCATGGCATCCAAAGCTGGTGATGACGGGGAGGTCATTACATATAATGTAGCTAAATTTGGAGAGGAACATAAAGGGTACTATGTTAAATTTAATGTTTTCGAGATGAAAGCAACTTGTAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGCAGACATGTTTTGGCAGTCTTTAGAGTTACCAATGTGCTTACTCTCCCATCTCATTATATATTGAAACGTTGGACAAGAAATGCCAAGAGCAATGTAATATTAGAAGAACAATCTTGTGATGTATATACTTACTATTTGGAATCCCATACAGTTAGATATAACACCCTTCGACATGAGGCCTTTAAATTTGTTGATGAAGGCGCTCAGTCTGCTGAAACTTATGATGTTGCAATGGATGCTTTACAAGGAGCTGCAAAAAGAGTTTCTCAGGCAATGCAAAATGAGGGAAGAATTCCTATCAGTAATGGAAAATTAAGGAGTCACGTGCTGAATGATGAAAGTCATGCTAATTACACAAGTGCATGCCAGGAAGAATGCTTGAGCCAACATACGTCTAAGGATGATTTGGATACAAATATTAGAAAACTCCTCAATGAGCTTGAGTTTGCAAATCGAAAGTGTGAAATTTATCGGTCCAACCTGCTTTCAGTTTTGAAAGCTGTTGAGGATCACAAGTTACAGTTGTCTGTTAAGGTGGAAAATATCAAAATAAGCATGAAAGATGGCATCTAA 2352 0.4188 MMDNEVLEFDIGLGGGEGEYDDDGGDIEHPIDEDELGDSSGGGAVATGIYLPEGDLSDLEPCEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHSENPNFFYAVQGDEDQSVNNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGRPPVSITTDHDSVIRSAIIQVFPDTRHRFCKWHIFKKCQEKLSHIFLKYPNFEAEFHKCVNLTESIEEFESCWSTLVDKYDIRDHEWLQAIYSACRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYINASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLTFMASKAGDDGEVITYNVAKFGEEHKGYYVKFNVFEMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEEQSCDVYTYYLESHTVRYNTLRHEAFKFVDEGAQSAETYDVAMDALQGAAKRVSQAMQNEGRIPISNGKLRSHVLNDESHANYTSACQEECLSQHTSKDDLDTNIRKLLNELEFANRKCEIYRSNLLSVLKAVEDHKLQLSVKVENIKISMKDGI 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00006 783 Coils Coil 726 753 - -
Phco3g00006 783 Pfam SWIM zinc finger 576 602 IPR007527 GO:0008270
Phco3g00006 783 SMART 26again6 579 606 IPR006564 GO:0008270
Phco3g00006 783 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Phco3g00006 783 MobiDBLite consensus disorder prediction 12 44 - -
Phco3g00006 783 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 56 682 IPR031052 GO:0006355
Phco3g00006 783 MobiDBLite consensus disorder prediction 15 33 - -
Phco3g00006 783 Pfam MULE transposase domain 288 381 IPR018289 -
Phco3g00006 783 Pfam FAR1 DNA-binding domain 76 167 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00006 Phco-Chr3 93552 99538 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco3g00006 MULE 6.2e-28 CL0219