Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g03065 ATGAACGGATCGTCCTTTAACCGATCCCATATATCCAAAAGCGGATTCGTGTTAGGACAGGACAGACATATGCCAACGGGACCAAGAGGGGCGGATCGGGTAGTGACCCTGTCTGGACTGGAACCGAACCAAACCAAACGTTGCACGTCTCTCGTCAGAGGCATTCTCACAGCACAGACCACGCAGTTACTCTTCATCTTCATCTTCTTCGTCTCTTCCTCTTCATTCCTTTCTATCTCTTATTCAATTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTATCTATATTCTCACTAACTCACTCGCCTTTACTCACCAACCCAAGCTTCCACCCCTTTTCGACTCCCTTCCACTCACTCGCAGCATACTTGAAATTCTCTATTTTCATTCCACCGGATGTATTTGCATGTGAACAACGGGAACTGATGGGCAAGAAAGTCAGAAAGAAGAGTCGTGGTTCTGCCAAGGAGAAGGGGGTTGCTACCCATTTGCCAAAAAAGGTTATTGAATCAACCAACCCGACCGTCGAGTCTGTTGATGAGGGCGTTTTGAGTCCAAAAGAGACAAAATTTTGCCCTCATCTCGTAAAAGCTGTTAATTTAAGCAGATTGTCCACCAAGTTTGAGTCTTGTGGATCCGTAAGGTGTGAAGATTGTATAGAAGGTGCCACTGATAGAAGAAGTGGTAAAGGAAAAGGTAAAAATGGGAAGAAGAAAGGTGGTGCATCACTGGATTCAAAATCTGAGTCAAAGTCTATATGGGTTTGTTTGGAGTGTGGTCAGTATACCTGTGGAGGCGTGGGGCTACCAATAACCCCTCATTGCCATGTCGTAGGGCATGCCAGGAAAAACCGGCACCACTTGGTGGTTCATTTTGATAAGCCTCAACTGTGTTGGTGTTTCCCTTGCAGCATGCTTATCCAAGTTGATAATATTGAAAAAACTGATGAATCGAGTCATCTTCTTTCTGATGTTGTCAAATTGTTGAAAGGACGATCACAAGAAAAATCTTCAGTGGATATTGAAGACGTTTCCGCTGGGGATAGCAGTATTACTTCGGATATTAAGTCAAGAGCTCTGTTCACAAATGATTCGACTGTCCAAGGTGGTTATGTAGTTAGAGGTATGCTTAATCTGGGGAATACTTGCTTCTTCAATTCAGTCATGCAAAATCTGCTGGCCATGAATAGATTGCGGGACAACTTTCTAAAGTTAGATTCTCCAGTCGGGCCACTTATTAGTTCCTTGAAGAAGCTTTTCACTGAAACAAACCCGGTATCAGGACTGAAAAATGTTATAAATCCTAGATCCTTTTTTGGCTGTGTCTGTTCTAAGTCTCCCCAATTTCGAGGATATCAGCAGCATGACAGTCACGAATTGCTCCGTTGTTTACTCGATGGTTTAAGTACTGAAGAAATGGCTGGAAGAAAGCAGAATGGTTCTCCAAAGCGAGATGGAACCTCTTCCAATACGTTAGTTGATGCTTTATTTGGGGGTCAGATATCAAGTACTGTATGCTGCATAGAATGTGGGCATTTCTCAACAGTGTATGAACCTTTTTTAGATCTTTCACTTTCTGTTCCAACTAAGAAACCTCCGCTTCGGAAGGCCCAACAAGTACCTCGAACCAAGAAAGGTAAACTTCCAGCAAAAAAAGGTGGAAAGACTCGAGTAAAAGTTAACAGGGATACTGATCCCTCACCTGTTCAAACTCTATCAAGCCAATTAGCCAGCCACCAATCATATTCTCCTGATCAGTCAGCTGCCGGAGAGATGGGGACTTCTTCTGGTTATTCTAAATTATTAGGTTCTGAACAAATAAACAGCGTGACTGATAAAGAGGAGTTGTCTTCATCTAATTTGGTTATTGCTGGAGAGCCTCAACGTAAGCAAGTTCTTGACAATGGTGCATTGAAAACATCAGAAGATTGTACATGGTTAGATTATGTGGAAGCTGGAACAGTGATAGATGAGTGTGATTTTATTTCCCAAAAGGAGGATGCTCCAGAGGTACAGGATACTGAGAGCAAAGAAGAATGTTCAAATGAATTCCATGGACAGACCAGCAGTGAATCCAATGGTCCTGTTTGTTTACCTAAGGATGATCAGAACCTAAGACCCGAATTTTCTTCAGCAAATGGATGGGAAGATGAGGTTCCATTACAAGTTCAAGATTCAGAAGTGCTTTTACTTCCATACAAAGAAGAAAGTTCCTCGGCTGCTGAGATCATAGGAGGAGAGGGCGAAGCCTCCTCGTCAGTTTTGGGTGGTCATCCAGAAGAATCGGAGTTTGATGGCTTTGGTGACTTATTCAACGAGCCTGAAGTTGTTGCTGGGCCTGCTCCCAGACCATCTTCATGTAGTGAGGGCATGGAAGCTAGTTTTATCATTGGAAGTAATAGTGAGTCCGATCCAGATGAAGTAGATGACACAGATTCTCCTGTCTCTGTAGAGAGTTGCTTGGCACATTTTATAAAACCTGAGCTTCTCTCGGATGAAAATGCTTGGCATTGTGAGAATTGTTCAAAAGTTCTCCGTCAAAAGATGGAAAAAGAAAAGCAGGCAAGAGCTGTATCTGATGGAAAGGAGTCCGGTATTCATGATGAACCATGGCTTGCAGTTAATTCTTGTTCTGTTAATGTCAGAACCAATGGAAATGGGAGCATAAAAAATCACCAAAACATAGAAAGTTTAGTCTCACGGGATAAACATGACACAAATCTTGAAAATGGTCAAAGAGATGAGCTTAGTTTAGTCCTTAATGAAAGGGATACTGGGGCATTCGAAATGGAAGGTACTCATAATGATGAGTTACAGTCTTCAAGGTTTCATAATGTTTGCAATGAAGAAAGCTGCAGTCATTTAGATGCTGATTCGTGTACTGCAGAAAATTTCCAAAGAAATTCTCCGATGATAGATAATGATGACAATGAGTCGGGGGATGCTGACTCCAACAGTGTGAAAGTGAAGAGGGATGCAACCAAGAGGGTCCTCATATATAAAGCTCCGCCTGTCTTGACCATTCATTTGAAGAGATTCAGCCAAGATGCCCGTGGTCGCTTGAGTAAATTAAATGGCCATGTCAATTTCAGAGAAAAAATGGATATTAGACCATATATTGATCCCAGGTGCATAATTGAAGAGAAGTATGAATACCAATTGGTTGGTTTAGTGGAGCATTCGGGAACAATGAGAGGGGGTCACTATGTTGCCTATGTGAGAGGGGGGCACAGGAACAGTGGGAAAGAGAATGAGGGTTCCACATGGTATCAGGCAAGTGATGCATATGTGCGTGAAGTTTCCCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTATTCTACGAAAAAGCTTGA 3366 0.4254 MNGSSFNRSHISKSGFVLGQDRHMPTGPRGADRVVTLSGLEPNQTKRCTSLVRGILTAQTTQLLFIFIFFVSSSSFLSISYSIYLSLSLSLSLSLCLSIFSLTHSPLLTNPSFHPFSTPFHSLAAYLKFSIFIPPDVFACEQRELMGKKVRKKSRGSAKEKGVATHLPKKVIESTNPTVESVDEGVLSPKETKFCPHLVKAVNLSRLSTKFESCGSVRCEDCIEGATDRRSGKGKGKNGKKKGGASLDSKSESKSIWVCLECGQYTCGGVGLPITPHCHVVGHARKNRHHLVVHFDKPQLCWCFPCSMLIQVDNIEKTDESSHLLSDVVKLLKGRSQEKSSVDIEDVSAGDSSITSDIKSRALFTNDSTVQGGYVVRGMLNLGNTCFFNSVMQNLLAMNRLRDNFLKLDSPVGPLISSLKKLFTETNPVSGLKNVINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEEMAGRKQNGSPKRDGTSSNTLVDALFGGQISSTVCCIECGHFSTVYEPFLDLSLSVPTKKPPLRKAQQVPRTKKGKLPAKKGGKTRVKVNRDTDPSPVQTLSSQLASHQSYSPDQSAAGEMGTSSGYSKLLGSEQINSVTDKEELSSSNLVIAGEPQRKQVLDNGALKTSEDCTWLDYVEAGTVIDECDFISQKEDAPEVQDTESKEECSNEFHGQTSSESNGPVCLPKDDQNLRPEFSSANGWEDEVPLQVQDSEVLLLPYKEESSSAAEIIGGEGEASSSVLGGHPEESEFDGFGDLFNEPEVVAGPAPRPSSCSEGMEASFIIGSNSESDPDEVDDTDSPVSVESCLAHFIKPELLSDENAWHCENCSKVLRQKMEKEKQARAVSDGKESGIHDEPWLAVNSCSVNVRTNGNGSIKNHQNIESLVSRDKHDTNLENGQRDELSLVLNERDTGAFEMEGTHNDELQSSRFHNVCNEESCSHLDADSCTAENFQRNSPMIDNDDNESGDADSNSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFREKMDIRPYIDPRCIIEEKYEYQLVGLVEHSGTMRGGHYVAYVRGGHRNSGKENEGSTWYQASDAYVREVSLDEVLRCEAYILFYEKA 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g03065 1121 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 189 1120 - -
Phco2g03065 1121 FunFam Ubiquitinyl hydrolase 1 190 333 - -
Phco2g03065 1121 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 378 393 IPR018200 GO:0004843|GO:0006511
Phco2g03065 1121 Gene3D Cysteine proteinases 721 862 - -
Phco2g03065 1121 Gene3D Cysteine proteinases 897 1121 - -
Phco2g03065 1121 MobiDBLite consensus disorder prediction 229 248 - -
Phco2g03065 1121 MobiDBLite consensus disorder prediction 669 687 - -
Phco2g03065 1121 Gene3D Cysteine proteinases 360 592 - -
Phco2g03065 1121 MobiDBLite consensus disorder prediction 566 602 - -
Phco2g03065 1121 SMART Zf_UBP_1 247 300 IPR001607 GO:0008270
Phco2g03065 1121 FunFam Ubiquitinyl hydrolase 1 889 1121 - -
Phco2g03065 1121 Pfam Ubiquitin carboxyl-terminal hydrolase 378 1118 IPR001394 GO:0004843|GO:0016579
Phco2g03065 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 329 IPR013083 -
Phco2g03065 1121 MobiDBLite consensus disorder prediction 969 991 - -
Phco2g03065 1121 MobiDBLite consensus disorder prediction 669 711 - -
Phco2g03065 1121 Pfam Zn-finger in ubiquitin-hydrolases and other protein 251 313 IPR001607 GO:0008270
Phco2g03065 1121 MobiDBLite consensus disorder prediction 535 602 - -
Phco2g03065 1121 SUPERFAMILY RING/U-box 195 313 - -
Phco2g03065 1121 ProSiteProfiles Zinc finger UBP-type profile. 193 329 IPR001607 GO:0008270
Phco2g03065 1121 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1055 1072 IPR018200 GO:0004843|GO:0006511
Phco2g03065 1121 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 377 1121 IPR028889 -
Phco2g03065 1121 SUPERFAMILY Cysteine proteinases 376 1120 IPR038765 -
Phco2g03065 1121 MobiDBLite consensus disorder prediction 540 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g03065 Phco-Chr2 59067306 59075186 Transposed