Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g03039 ATGATGATGATGGAGGGAATAGGGTCAACAGGTCCGGCACCGTTCCTACTGAAGACATACGAGATGGTGGATGATTCATGGACGGATGAAATAGTATCGTGGAGTTCAACCAATGACACCTTCATAGTCTGGAACCCTGCTGAATTCTCTCGTCTTCTTCTTCCCACTTTTTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTTAATACATATGGATTTAGAAAAGTACACCCTGAGCGATGGGAGTTTGCCAATGAAGATTTTCTGAAAGATCAAAAGCATCTTCTAAAGAATATTCACCGCAGGAAACCTATCCACAGTCACTCACTCACACAACCTGTTGTGGATTCAGAAAGGTCCGCATTTGAGGAACAAATACACAAACTTTCACAGGACAAGACCACCATTCAATCCAATATTTTCCGCTTCAAACAGCTCCACTCCGCTGCCAACACTCATCTTCAAGATCTACGCCTGCGATTGGATGCCATGGAGGAGAGGCAGCAAAATTTGCTCACCATCTTTCAAAAGGCTCTTCACAATCCTACTCTTGTTCAACAGATCACTCGCAAAATCGAGTCCATGGATTTGCTGGCCTATAACAAGAAAAGGCGATTACCTCCTCAGCTTCATGACCATGACCATCACTTGCAGCCTGTTGCTGGAAACACCTTTGTTGAAAGTTTTGGAATGGAATTTGGAAATATTTCTCATCAAAATTTCTCCAATAAACTCACACTGGAATTGCCACCTGCTGTTTCAGATACGAACTTGATGGTGTCATGTAGTACACAGAGTTCAAATGAAGATGGAGAAAGCCCACATAAGATTATACTACCTCAGATAGCAGAGCTTGCACAAACTGGAGAATCTCTTCCATTTCAGATGCATTCCTTTTTATCACGAACCGCCACAGCTGCTGAGAGCCCCAAATTGGACTCAAATTATGAAGATGGTGACAGTTATATATCCTGTCTTTTGAATCTATCTCTGGCATCTTCTCCGTTACAAGCCAAGAGAAATACATGCACAGATAAATCCCCATCCCTAATAGACAGTCCAAAATTTGGAAAATTGGAAGGATCAAAATTTTGTGCCAATGATAGTAAAGAATATGATGCTGGAGCTTCTTCAAGCAAAAATCTGAACGAGGTTACTAATTTAGCTGAGGCTCCCCCAACTGCTCCAGTTAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCAGGCTGTGAAGACAATGAAGGCTCAATGTCCACCCACAAAGTAAATGCTTATGTTGCTGAGCAAGATGAAGAGCGCTCAGTTCACGGAATCGCTGGAAATGTTATGGACATGGATCACACACTCTGA 1368 0.4254 MMMMEGIGSTGPAPFLLKTYEMVDDSWTDEIVSWSSTNDTFIVWNPAEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPERWEFANEDFLKDQKHLLKNIHRRKPIHSHSLTQPVVDSERSAFEEQIHKLSQDKTTIQSNIFRFKQLHSAANTHLQDLRLRLDAMEERQQNLLTIFQKALHNPTLVQQITRKIESMDLLAYNKKRRLPPQLHDHDHHLQPVAGNTFVESFGMEFGNISHQNFSNKLTLELPPAVSDTNLMVSCSTQSSNEDGESPHKIILPQIAELAQTGESLPFQMHSFLSRTATAAESPKLDSNYEDGDSYISCLLNLSLASSPLQAKRNTCTDKSPSLIDSPKFGKLEGSKFCANDSKEYDAGASSSKNLNEVTNLAEAPPTAPVRVNDVFWEQFLTERPGCEDNEGSMSTHKVNAYVAEQDEERSVHGIAGNVMDMDHTL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g03039 455 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g03039 455 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g03039 455 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g03039 455 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 244 IPR027725 -
Phco2g03039 455 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Phco2g03039 455 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g03039 455 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g03039 455 FunFam Heat shock transcription factor 1 8 105 - -
Phco2g03039 455 Gene3D - 9 105 IPR036388 -
Phco2g03039 455 Coils Coil 149 176 - -
Phco2g03039 455 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g03039 Phco-Chr2 58935685 58937155 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco2g03039 HSF_DNA-bind 5.1e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g03039 2 58935685 58937155 Phco2g03039 2 58935685 58937155 ECH