Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g03022 | ATGTCGGAGATGGCGAGCCCAGATCCCGAGGGAGTGGACGGAGTGCGCATGACGTGGAACGTGTGGCCCCGCACCAAGGTGGAATCGAGCAAGTGCGTCATCCCTCTGGCAGCCACCGTGGCCCTCATCCGTCCCCACCCTGACATCCCCCGCCTCCAGTACGCCCCTCTCCGCTGCAAGACCTGCTCCTCCGCCCTCAACCCTTACGCCCGCGTCGACTTCACCGCCAAGATCTGGATCTGCCCCTTCTGCTACCAGCGCAACCACTTCCCCCCTCACTACCATGCCATCTCCGAAACCAACTTTCCCGGCGAACTCTACCCCCAATACACCACCGTCGAGTACATCCTCCCCCTCTCCAATTCCCTCAACCCTTCCCCCGTTTTCCTCTTCCTCCTCGACACCTGTCTCATCGAGGAGGAGATCCAGTTCCTCAAATCCGCGCTTCGTCGCGCCATTGGCCTTCTTCCTGATAACGCCCTCGTCGGCTTTGTCTCCTTCGGCACGCAGGTCCAGGTTCATGAATTGGGCTTCTCCGACATGTCCAAGGTTTATGTCTTCCGCGGCTCCAAGGAGATTCCCGCCGATCAGGTTCTCGATCAGCTAGGCCTTTCTACTTCCGGGAGGAGACCTCACAAGACACCCGCTGGTGTCGCCGGCGCCAGTGTCGGGGGACTCCCTAGTTCCGGCATCACACGCTTCTTGTTGCCTGCTTCTGAGTGTGAATATACTCTCAATGCGCTGTTAGATGAGTTGCAGACGGATCAGTGGCCGGTTCCGCCTGGGCGCCGCCCTGCGCGCTGTACCGGGGTTGCTTTGAGTGTTGCTGCAGGGTTGCTGAGTGCTTGTAATCCGGGGACTGGCGCTAGAATCATAGCTTTGGTTGGGGGGCCGTGCACGGAAGGACCTGGGGCGATTGTTTCAAAGGATCTGTCTGACCCAGTGCGCTCTCATAAAGATCTTGATAAAGATGCGGCACCATACTTCAAGAAGGCAGTCAAGTTTTATGAGGGTCTCGCTAAACAGCTGGTTAGCCAGGGTCACGTTTTAGACATTTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATTAAAGTTGCGGTTGAAAGAACTGGTGGTCTTGTTGTCCTGGCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAGCGAGTTTTTGAGGATGGGGAACAGTCTCTTGGTCTTTGTTTCAATGGAACCCTGGAGATAAATTGCTCCAAGGAAATCAAAATTCAGGGAGTGATTGGGCCTTGCACTTCCTTGGAAAAGAAAGGGCCTTCTGTTGCTGATTCTGTTATAGGAGAGGGAAACACAACGGCATGGAAGATGTGTGGTCTTGACAAAAGCACGTGCTTGACTGTGATGTTTGATCTTTCATCAAGTGATCGGGCAAACACCCCAGGTGCTGTCAACCCACAATTGTACCTACAGTTCCTTACAAGTTACCAGGACCCAAGTGGTCAATCAGTGCTTCGTGTCACGACAGTAACTAGGAGATGGGTTGATAGTTCTGTTAGCTCTGAGGAATTGGTTCAAGGATTTGACCAAGAAACCGCAGCAGTTGTAATGGCTAGATATGCTTCTCTAAAAATGGAGAGTGAGGAAACATTTGATGCTACACGGTGGTTGGATCGGTTTCTCATTCGCCTCTGTTCTAAGTTTGGTGACTATCGCAAGGATGATCCGTCATCTTTTACATTAAACCCATCATTTTCACTTTTCCCTCAGTTTATGTTCAATCTGCGTCGCTCACAGTTTGTACAGGTCTTTAACAACAGTCCAGACGAGACGGCATATTTCCGCATGTTGTTAAACAGGGAAAATATTAGTAATGCTGCTGTTATGATTCAGCCTTCACTGATAGCATATTCATTTAATTCACTACCTGCACCAGCATTGTTAGATGTGGCCTCGATTGCTGCAGACCGGATTTTGTTGCTAGATTCATATTTCAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGCAACTTGGGATACCAGGACCAGCCAGAACACCAGGCATTTGCACAACTATTACGAGCTCCACATGATGATTCCCAAATGATAATTAGAGAGCGGTTCCCAGTTCCTAGATTGGTAGTGTGTGACCAGCACGGTTCCCAGGCTAGATTTTTATTAGCAAAACTGAATCCCTCAGCAACGTATAATAATGCACACGAGATGTCTGCTGGTTCGGATGTAATCTTTACTGATGATGTGAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAGGTTGGCTGTCCAATCTTGA | 2307 | 0.5015 | MSEMASPDPEGVDGVRMTWNVWPRTKVESSKCVIPLAATVALIRPHPDIPRLQYAPLRCKTCSSALNPYARVDFTAKIWICPFCYQRNHFPPHYHAISETNFPGELYPQYTTVEYILPLSNSLNPSPVFLFLLDTCLIEEEIQFLKSALRRAIGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGSKEIPADQVLDQLGLSTSGRRPHKTPAGVAGASVGGLPSSGITRFLLPASECEYTLNALLDELQTDQWPVPPGRRPARCTGVALSVAAGLLSACNPGTGARIIALVGGPCTEGPGAIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDIFASALDQVGVAEIKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGVIGPCTSLEKKGPSVADSVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRANTPGAVNPQLYLQFLTSYQDPSGQSVLRVTTVTRRWVDSSVSSEELVQGFDQETAAVVMARYASLKMESEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLIAYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQDQPEHQAFAQLLRAPHDDSQMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMSAGSDVIFTDDVSLQVFFEHLQRLAVQS | 768 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g03022 | 768 | Gene3D | von Willebrand factor, type A domain | 126 | 404 | IPR036465 | - | |
| Phco2g03022 | 768 | Gene3D | Severin | 626 | 730 | IPR029006 | - | |
| Phco2g03022 | 768 | Pfam | Sec23/Sec24 helical domain | 524 | 620 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Phco2g03022 | 768 | FunFam | Protein transport protein SEC23 | 521 | 638 | - | - | |
| Phco2g03022 | 768 | CDD | Sec23_C | 616 | 736 | IPR037550 | GO:0030127|GO:0090114 | |
| Phco2g03022 | 768 | Pfam | Sec23/Sec24 beta-sandwich domain | 406 | 510 | IPR012990 | - | |
| Phco2g03022 | 768 | Gene3D | - | 53 | 112 | - | - | |
| Phco2g03022 | 768 | FunFam | Protein transport protein SEC23 | 626 | 730 | - | - | |
| Phco2g03022 | 768 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 627 | 767 | IPR036180 | - | |
| Phco2g03022 | 768 | Gene3D | Sec23/Sec24 helical domain | 521 | 765 | - | - | |
| Phco2g03022 | 768 | Pfam | Sec23/Sec24 zinc finger | 56 | 94 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Phco2g03022 | 768 | FunFam | Protein transport protein SEC23 | 53 | 112 | - | - | |
| Phco2g03022 | 768 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 47 | 118 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Phco2g03022 | 768 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 8 | 767 | IPR037364 | - | |
| Phco2g03022 | 768 | Pfam | Gelsolin repeat | 636 | 724 | IPR007123 | - | |
| Phco2g03022 | 768 | SUPERFAMILY | Helical domain of Sec23/24 | 524 | 626 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Phco2g03022 | 768 | Pfam | Sec23/Sec24 trunk domain | 126 | 395 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Phco2g03022 | 768 | Gene3D | - | 10 | 507 | - | - | |
| Phco2g03022 | 768 | FunFam | Protein transport protein SEC23 | 126 | 405 | - | - | |
| Phco2g03022 | 768 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 8 | 523 | - | - | |
| Phco2g03022 | 768 | SUPERFAMILY | vWA-like | 127 | 396 | IPR036465 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco2g03022 | Phco-Chr2 | 58830998 | 58836399 | Proximal |