Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g03020 ATGGCGCCTCCCGTTCCGAAAGTTCTGATGGTCGCAAAGAAGCATAGCATCGCTCTCTCTATTGCTTCTGTTCTCTCTCGCACTCAGGTGCATATTTGTAGACATTTAAGTCAAGAAGCTCGTGGATGTCGTTATTTGGTCTCCATGGTTACTTTTAAAAGCTATTTGATTTATAGAAGAACAGAGGTCCCTTTCAGAATCTTCAGATTTCGTAGCACTTTCTTTTTCTCACTGGAAGCTACACGCTGGCATATATATGGTGGCTTGAGATATTATCATTCTGGGTCAGAGTGGGGTAAAAATCAGAAATTGAATCCAAACGAAAAGCCAAACAGGGTGGGACTTTTCTGGGACTTGGACAATAAACCACCCAATGCAATCCCACCTTATGAAGTTGCCAATAAGCTGAGAATAGCTGCATCTTCCTTTGGGATTGTTCGGTACATGGTGGCTTATGCAAATAGCCACACCTTTAGTCATGTTCCTCAATCTGTACGGGAGAAAAGGAAAGAGAGGGAAATGTTGCATCGTCTAGAGAACAAGGGTGTCATCAAGCCAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTTATACTAATGACAAGCTTGTCAACCATTTCAAGCAACTGCATGAGCGTGAGCACGGGAAAAGGATGAGCCAGATTGAGTCTGCTAGAGGGAGCCGGAGGGTGAAGTTGGTGGCTAAGTATTCGATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTATTCTCACACCCAAAGTGGGATATGGTTTGGCAGATGAGCTCATACGGGCTGGGTTTTGGGTTCAAACTGTGTCTGATAAGCTACAAGCTGCAGACCGAGCATTGCAAAGCCACATTGTGGATGTCATGGATCATAGGCAGGTTGAGTGTGTGGTTCTTGTGTCTGATGATTCTGATTTTGTCGATGTGATAAAGGAAGCAAGGCTGCGATGTCTCAAGACGGTTGTCATTGGGGATATTGATGATGGTGTCTTGAAGAGGACTGCTGATACTGCCTTTTCTTGGGTGGAAATTCTGATGGGAAAGGCTAAGAAACAGGCTGTTTCGGTTGTGAAAAACTGGAAGGATCGTGATATTTTAAAGAGGATAGAGTGGACATATAACTCAGATGCGGATAAAAAGAAATTGAATGTGGATGATACCATTGCTGAAACATCTGAAGATGATAATTTTGAAGATGCCTGTGATGAAGTTGATGAAGTCTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGACAATGATGTCACCAAGAGACAGTCAGGCTAA 1311 0.431 MAPPVPKVLMVAKKHSIALSIASVLSRTQVHICRHLSQEARGCRYLVSMVTFKSYLIYRRTEVPFRIFRFRSTFFFSLEATRWHIYGGLRYYHSGSEWGKNQKLNPNEKPNRVGLFWDLDNKPPNAIPPYEVANKLRIAASSFGIVRYMVAYANSHTFSHVPQSVREKRKEREMLHRLENKGVIKPNEPYRCRVCGRKFYTNDKLVNHFKQLHEREHGKRMSQIESARGSRRVKLVAKYSMKMEKYKKAASAILTPKVGYGLADELIRAGFWVQTVSDKLQAADRALQSHIVDVMDHRQVECVVLVSDDSDFVDVIKEARLRCLKTVVIGDIDDGVLKRTADTAFSWVEILMGKAKKQAVSVVKNWKDRDILKRIEWTYNSDADKKKLNVDDTIAETSEDDNFEDACDEVDEVYKDDRGSWWELDSDNDVTKRQSG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g03020 436 SMART c2h2final6 190 213 IPR013087 -
Phco2g03020 436 Gene3D Classic Zinc Finger 163 252 - -
Phco2g03020 436 CDD PIN_LabA-like 200 331 - -
Phco2g03020 436 Pfam NYN domain 264 342 IPR021139 GO:0004540
Phco2g03020 436 SUPERFAMILY beta-beta-alpha zinc fingers 186 216 IPR036236 -
Phco2g03020 436 ProSitePatterns Zinc finger C2H2 type domain signature. 192 213 IPR013087 -
Phco2g03020 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 218 IPR013087 -
Phco2g03020 436 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 101 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g03020 Phco-Chr2 58823870 58827300 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g03020 NYN 2e-06 CL0280