Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g03017 ATGGCGCCTCCCATTCCCAAAGTTCTGATGGTCGCAGAGAAGCCTAGCATCGCACTCTCTATTGCTTCTGTTCTCTCTCGAAATCAGGCGTCTACGAGAAGGGGAAGTACGGAAGTTCATGAATTTGACGGGAAGTTTCTTGGATCGCCTGCACATTTTAAAGTAACATCAGTTATTGGGCACGTATTCAGTGTAGATTTTCCTGCTAAATATCAAGATTGGGCAGCTACAGATCCGTTAGATCTTTTTCAGGCTCAGGTTCTAAAGAATGAGTCAAACCCAAAGGCGCATATTTGTAGACATTTAAGTCAAGAAGCTCGTGGATGTCGTTATTTGGTATTATGGTTAGATTGTGATCGTGAAGGAGAAAATATATGTTTTGAGGTTATACAGTGTACTGGTTTCAAAACAAATGATACTTACCGTGCACGGTTCTCTTCTGTTACTGAGAAAGATGTTGTGAAGGCTTTAGACAACCTTGTCAAACCTAATAAAGATGAGGCATTGGCGGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGAGTTGCCTTTACTCGATTTCAAACGAGTTATTTCCAGGGAAAATATGGGAACCTAGATTCCAGGGTCATCTCCTATGGACCGTGTCAGACTCCTACCTTAGGATTTTGCGTGCAGCGATATTTACAAATAAACACTTTCAAGTCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATTGAAAGTGGCTATGAAATTCAGCTAGAATGGCAACGTGGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAGCTTGTTTCCGAAGATGGACTTCTGGAAGTGACTGAAATATCAGAAAAACAGGAAACCAAAAGTCGTCCTGTTGGTCTGAACACAGTAAACCTTCTAAAGGTTGCTTCAAGTGCTCTAGGATTTGGACCTCAGATGGCTATGCAACTAGCTGAACGGTTGTATACTCAAGGTTTCATCAGCTATCCGCGCACAGAAAGCACAGCGTACCCTCCTTCATTTGACTTTCTCGGTGTACTCTCTGCACAAACAAATAATCCAACATGGGGTAATTATGTACAAGGACTACTTACTGCTGGTTATCAAAAACCTCGTCCAGGAACTGATGTAGGGGACCATCCTCCCATTACTCCAATGAGATCAGCAGCAGAAGATATGCTGGGCAATGATGCTTGGAAGCTCTACCAATATATTTGTCAACACTTCATAGGCACAGTGTCTCCGGACTGCAAGTATATAAGGAGGAAGGTTGAGTTTTCCATTGGTGGAGAGTCCTTTCATTGTACAGGGCAGCATGTTGTCACCAAAGGATTTACTGCTATAATGCCTTGGTTGGCCTTGAATGATAAAAATATTCCATCATTTGTAAAAGGGCAGAAAATAGAAGTATCAAAGTTGGAGCTCTATGAGGGGATTACCAGTCCTCCAGATTACCTAACTGAAAGTGAGCTGATATCCCTGATGGAGAAAAATGGAATAGGAACAGATGCATCAATTCCCGTACATATTAACAACATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGCAGAAAGCTTGTCCCAACCCCATTAGGCATTACATTAGTAAGAGGTTATCAAACTATAGATCCAGATCTCTGCCTTCCCGATATTCGTAGCTTCATTGAGCAACAGATTACTCTTATTGCCAAGGGTCAGGTAGATCATCGACATGTGGTGCAGCATGTAATCCAACAGTTCATACAGAAGTTTAGTTACTTTGTCAAAAAGATTGAAGATATGGATGCATTATTTGAAGCACAGTTTTCTACGCTTACTGAATCAGGGCGTATTCTGAGTAAATGTGGTAAATGCTTGAGATATATGAAGTATTCTACTCAGCCTCCACGATTGTATTGTGGTACATGTGAGGAGGTTTATTATCTTCCTCAGAAGGAAATTATCAAGCTGTACAAAGAATTGTCTTGTCCTTTGGACAATTTTGAGCTTTTAATTTGCTCCATGCCTGGCCCAGATGGTAAATCATTCCCACTATGCCCATACTGCTACAGTAATCCCCCATTCGAAGGCATTGAAGCACTCATCAATACCGCTAAAACTGGTAGTGCTGGCAAGATTGGCAAGGGATCTGGCATGCCCTGCAGCCTATGCCCTCATCCCAGTTGCCCAAATTCTCTGGTTTCCCAGGGTGTATGTGCTTGCCCAGAGTGCAGTGGAACACTTGTCTTAGACCCAATAAGTGCTCCCAGATGGCGACTTTGTTGTAATATGTGTAATTGCCTAGTTTTTCTTGCACAAGGTGCTCACAGAATCTCCACAACTAAAGAGCGGTGTCCTGAATGTGACTCTTCAATCATAGAAGTAGACTTCAACAAGAAAACAACTCCTCTGGAAGACGGAGCAACCTTGCACCGTGGCTGCATTCTATGCGATGAGTTGCTTCATTCCCTTGTGGAAATGAAACATGGTAGAAGTTTCAAGCACATGAGCTCAAGAGGAAGAGGTAGAGGTAGAAAAGGTGGAAGGGGCAGAGGACGCGGGGGTGGAAAAATGATGGATCCAAAAATGAGTTTCCGAGATTTTTAA 2586 0.4227 MAPPIPKVLMVAEKPSIALSIASVLSRNQASTRRGSTEVHEFDGKFLGSPAHFKVTSVIGHVFSVDFPAKYQDWAATDPLDLFQAQVLKNESNPKAHICRHLSQEARGCRYLVLWLDCDREGENICFEVIQCTGFKTNDTYRARFSSVTEKDVVKALDNLVKPNKDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKSEKFWSLHPYIIESGYEIQLEWQRGKLFDINVAMMFQKLVSEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFLGVLSAQTNNPTWGNYVQGLLTAGYQKPRPGTDVGDHPPITPMRSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYIRRKVEFSIGGESFHCTGQHVVTKGFTAIMPWLALNDKNIPSFVKGQKIEVSKLELYEGITSPPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTPLGITLVRGYQTIDPDLCLPDIRSFIEQQITLIAKGQVDHRHVVQHVIQQFIQKFSYFVKKIEDMDALFEAQFSTLTESGRILSKCGKCLRYMKYSTQPPRLYCGTCEEVYYLPQKEIIKLYKELSCPLDNFELLICSMPGPDGKSFPLCPYCYSNPPFEGIEALINTAKTGSAGKIGKGSGMPCSLCPHPSCPNSLVSQGVCACPECSGTLVLDPISAPRWRLCCNMCNCLVFLAQGAHRISTTKERCPECDSSIIEVDFNKKTTPLEDGATLHRGCILCDELLHSLVEMKHGRSFKHMSSRGRGRGRKGGRGRGRGGGKMMDPKMSFRDF 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g03017 861 FunFam DNA topoisomerase 5 163 - -
Phco2g03017 861 FunFam DNA topoisomerase 289 414 - -
Phco2g03017 861 Gene3D Topoisomerase I, domain 4 289 414 IPR013826 -
Phco2g03017 861 ProSiteProfiles Toprim domain profile. 7 150 IPR006171 -
Phco2g03017 861 PRINTS Prokaryotic DNA topoisomerase I signature 498 512 IPR013497 GO:0003677|GO:0003916|GO:0006265
Phco2g03017 861 PRINTS Prokaryotic DNA topoisomerase I signature 205 223 IPR013497 GO:0003677|GO:0003916|GO:0006265
Phco2g03017 861 PRINTS Prokaryotic DNA topoisomerase I signature 400 416 IPR013497 GO:0003677|GO:0003916|GO:0006265
Phco2g03017 861 PRINTS Prokaryotic DNA topoisomerase I signature 323 332 IPR013497 GO:0003677|GO:0003916|GO:0006265
Phco2g03017 861 PRINTS Prokaryotic DNA topoisomerase I signature 112 125 IPR013497 GO:0003677|GO:0003916|GO:0006265
Phco2g03017 861 MobiDBLite consensus disorder prediction 825 861 - -
Phco2g03017 861 Gene3D Topoisomerase I, domain 2 170 584 IPR013824 -
Phco2g03017 861 Gene3D - 2 163 - -
Phco2g03017 861 SMART topIaneu2 281 536 IPR003602 GO:0003677|GO:0003916|GO:0006265
Phco2g03017 861 CDD TOPRIM_TopoIA_TopoIII 7 160 IPR034144 -
Phco2g03017 861 Gene3D Topoisomerase I, domain 3 229 482 IPR013825 -
Phco2g03017 861 SMART topIban2 139 235 IPR003601 GO:0003677|GO:0003916|GO:0006265
Phco2g03017 861 Pfam DNA topoisomerase 163 574 IPR013497 GO:0003677|GO:0003916|GO:0006265
Phco2g03017 861 SUPERFAMILY Prokaryotic type I DNA topoisomerase 7 623 IPR023405 -
Phco2g03017 861 SMART toprim5 7 138 IPR006171 -
Phco2g03017 861 MobiDBLite consensus disorder prediction 827 845 - -
Phco2g03017 861 Pfam Toprim domain 8 147 IPR006171 -
Phco2g03017 861 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 318 332 IPR023406 GO:0003917
Phco2g03017 861 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 821 IPR000380 GO:0003677|GO:0003917|GO:0006265
Phco2g03017 861 MobiDBLite consensus disorder prediction 846 861 - -
Phco2g03017 861 CDD TOP1Ac 166 584 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g03017 Phco-Chr2 58799995 58809741 Proximal