Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02997 ATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAGGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGCTTGCTCTCATCATCTTCTCCACTAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGCATGCTGAAAACGTTAGAGAGGTACCAGAAATGTAACTATGGAGCGCCCGAGGCCAATGCATCAACAAAGGAAGCCTTGGAGTTAAGCAGTCAACAAGAATATTTGAAGCTGAAGGCACGGTATGAAGCTCTACAACGTTTTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAATGAGCTTGAATCACTTGAAAGACAGCTAGATTCGTCGTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTTTCTGATAGTCAACGCAAGGAACACTTGCTAGGTGAGGCAAACACAGCTCTCAGACAAAGGTTGGAAGAGTATCAAATAAACCAATTTCAACTGAATCCCAGTGGTGAAGATATGGGGTATGACCGTCATCCAGGTCAAAACCAAGGCGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACATTACAAATGGGATATCGACCTGATCCAGTATCAGTGATAACAGGAGGACCGAGCATGAACAATTACATGGCAGGATGGTTACCATGA 726 0.4477 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCSTSSMLKTLERYQKCNYGAPEANASTKEALELSSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKEHLLGEANTALRQRLEEYQINQFQLNPSGEDMGYDRHPGQNQGDALFQPLECEPTLQMGYRPDPVSVITGGPSMNNYMAGWLP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02997 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Phco2g02997 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco2g02997 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco2g02997 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco2g02997 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco2g02997 241 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco2g02997 241 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Phco2g02997 241 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco2g02997 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Phco2g02997 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco2g02997 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco2g02997 241 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Phco2g02997 241 Coils Coil 126 146 - -
Phco2g02997 241 FunFam MADS-box transcription factor 1 13 87 - -
Phco2g02997 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02997 Phco-Chr2 58694724 58699069 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco2g02997 K-box 1.9e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02997 2 58694724 58699069 Phco4g02003 4 39783839 39790972 PCT