Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02992 ATGCCACCTGGTTTGGAGTACAATATCGATGATCTGTTCCAAGAAGCTAAAAAGCGATGGCTCAAGCCTGTGGAAGTGCTTTGCATTTTACGGAATTACGACATGTGCGAGCTTACCCACCAGCCCCCCCATCAACCAGCTGGTGGATCCCTATATCTGTTTAATAAAAGAGTGACGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGGAAGAAAAAAGATGGAAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGAAGAAATCCTAAACTGCTACTATGCACGTGGAGAGGAGAACCATACTTTTCAGAGACGGAGCTATTGGATATTGGAGCCGGAATATGAGCATATTGTTCTGGTGCATTATAGAGAAACAAGTAAGGGGAAATCCAATTCTGAACCTGTCACACAATTGTCATCAGGTTCCTCTCTTGTTTTTAGTCAGAGTCACAGCCTGTATACTGCTCACAATCCAGGGACATCATCCGTGTTTGGTGATTCATGTGAACCTAATCACAATTTCTCTAGTCCTGGGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTGCGCCAATTGGAAGAAGTGCTGAATATAAATGAGGACAGCCTCGATGAAAGGTTGTCTGGACCAAATGATCAAGGGCAACTTTTTGTTATGGATAATGGAAGAGAAGATAACAGTGACACATACTATCATGACTCACTTGATGATTGTCCTGACGGAAAAGAAAAAACTATATACTGGACCAAGGTGCTTGAAGCATGCAAGCCCTTACCTGTGATTGTGACCAATATACCAGATCAATATGTATATGAGGCATTTGAAAATGAAGAGTCATTATTTTCTTCGGGAAGGGAAATGATTGCCAACGTGGAAAACATTCAGTGGCTAAACTCCAACAGTAATAATGTTGAGAACTCTGTTTTTCCACTTCCTCAAGGCGACAATGGAGTCAAATTTCCTCAATGTTCTCTGGTAGAAACTCCCGTAACTACCTCTGACTACAATGAAACATTTTTTGACCAAACCCAAATTCAAGAACCTCTTGGTGGTGTAGATTCAAGCTTGACCGTTGAACAGAAACAGAAATTTACTATTAGGGCAGTCTCCCCAGAATACTGCTATGCCACTGAGACTACAAAGGTTATCATTATTGGATCATTTCTCTATCATCACGCGGATTCTACCTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAGATTATTCAGGATGGCGTAATTTGTTGTGAAGCTCCATCCAATCTTGTTGGAAAGGTTAATCTGTGCATTACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGAGTGAGTTTGAGTTTCGAAATAAGACTACTAGTTGCACTCGCTGTAATTCGTTGGAAACAGAAGATGGTAAAAGTCCAGAAGATCTGCTATTACTTGTTCGATTTGCGGAGATGCTCCACTCTGATTCAACTAAAAAGGATGACAGCACAGAATCTGGAAGTCATCTTTCAACAGAACAGAAAGATAGTGATGATTCATGGAGCCATATTATTGACACTCTTCTAGTTGGCACTGGAAAATCATCTGATACTGTTAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCGCTGGCTCTCTAACCGATCCAATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAACAGGGGATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCCTGAACCCCATTCTCAATTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACCGCCCTTCATTGGGCTGCACGGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGGAGCGGTGACAGATCCAAGTTCAGAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAACCTCCCATGGCCATAAGGGACTAGCAGGTTATCTTTCTGAGGTACACCTAACAAGCCACTTGTCATCCCTCACATTGACAGGGAGTGAGATTTCTAATGGATCTTCTGAGCTTGCAGCCGAGTTAACTGTCTGTAGTGTCTCTAAAGAAAATCTTGTGGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCGGTCAGAAATGCAGCTCAGGCAGCTGCACGGATACAAGATGCTTTTCGTGCACATTCTTTACGGAAACAAAGAGAAGCTGCAGCTGCTGTGGCATGTCTAGATGGATATTGTATTGGTCCAGGTTGCAATCATGATAACATTTCAGTGCTTTCTGCCATGTCAAAACTTAGTTCTCAGAGCTTGGGTGATTACAATTTAGCTGCCTTGTCGATTCAGAAGAGATATCGAGGTTGGAAAGGTCGTAAACAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCCATTGTAAGGGGTTACCAGGCTCGGAAGCATTACAAGCTAATATTATGGGCAGTTGGAATCTTTAATAAGGTTGTGCTACGATGGAGGAGAAAACGCGTTGGTATAAGTAGTGTCCGGCAAGAAATGGATTCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTAAACGTGTTCCGAAAAGAGAAAGTAAATGCAGCAGTTGACATGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGATGATGCTCGTCAGCAATACAGGCGCTTACTTTCATTGTATCGTCAAGCCAAGACTAAAAATGACAGCACAAGTGGTGAAGCACCGTTATCAACTTCGCAAGAGGTTGCTCTCGATATGGAAGACGATGATTTGAATCTGTTTTGGGAAAAGCTTTTGGCTTCGGAAGAGGATGCTCTCGATATGGAAGACAATGATTTGAATCAGTTATGGGAAAAGCTTTTGGCTTAG 2898 0.4286 MPPGLEYNIDDLFQEAKKRWLKPVEVLCILRNYDMCELTHQPPHQPAGGSLYLFNKRVTRFFRKDGHNWRKKKDGRTVGEAHERLKVGNEEILNCYYARGEENHTFQRRSYWILEPEYEHIVLVHYRETSKGKSNSEPVTQLSSGSSLVFSQSHSLYTAHNPGTSSVFGDSCEPNHNFSSPGSLEVTSEAQALRQLEEVLNINEDSLDERLSGPNDQGQLFVMDNGREDNSDTYYHDSLDDCPDGKEKTIYWTKVLEACKPLPVIVTNIPDQYVYEAFENEESLFSSGREMIANVENIQWLNSNSNNVENSVFPLPQGDNGVKFPQCSLVETPVTTSDYNETFFDQTQIQEPLGGVDSSLTVEQKQKFTIRAVSPEYCYATETTKVIIIGSFLYHHADSTWACMFGDVEVPAEIIQDGVICCEAPSNLVGKVNLCITSGNRVPCSEVSEFEFRNKTTSCTRCNSLETEDGKSPEDLLLLVRFAEMLHSDSTKKDDSTESGSHLSTEQKDSDDSWSHIIDTLLVGTGKSSDTVNWLLEELLKDKLQRWLSNRSNERDEGTDCSLSKKEQGIIHMVSGLGFEWALNPILNCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSSENPSGETAASVATSHGHKGLAGYLSEVHLTSHLSSLTLTGSEISNGSSELAAELTVCSVSKENLVASEDQVSLKASLDAVRNAAQAAARIQDAFRAHSLRKQREAAAAVACLDGYCIGPGCNHDNISVLSAMSKLSSQSLGDYNLAALSIQKRYRGWKGRKQFLALRQKVVKIQAIVRGYQARKHYKLILWAVGIFNKVVLRWRRKRVGISSVRQEMDSNEEESDDEDFLNVFRKEKVNAAVDMALKRVLSMVRHDDARQQYRRLLSLYRQAKTKNDSTSGEAPLSTSQEVALDMEDDDLNLFWEKLLASEEDALDMEDNDLNQLWEKLLA 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02992 965 Gene3D - 535 668 IPR036770 -
Phco2g02992 965 Coils Coil 889 909 - -
Phco2g02992 965 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Phco2g02992 965 MobiDBLite consensus disorder prediction 627 645 - -
Phco2g02992 965 FunFam Calmodulin-binding transcription activator 4 isoform A 479 664 - -
Phco2g02992 965 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Phco2g02992 965 ProSiteProfiles Ankyrin repeat profile. 599 631 IPR002110 GO:0005515
Phco2g02992 965 MobiDBLite consensus disorder prediction 627 646 - -
Phco2g02992 965 ProSiteProfiles IQ motif profile. 717 742 IPR000048 GO:0005515
Phco2g02992 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 827 IPR027417 -
Phco2g02992 965 SMART ANK_2a 599 628 IPR002110 GO:0005515
Phco2g02992 965 Pfam Ankyrin repeats (3 copies) 582 659 IPR002110 GO:0005515
Phco2g02992 965 ProSiteProfiles IQ motif profile. 800 824 IPR000048 GO:0005515
Phco2g02992 965 ProSiteProfiles IQ motif profile. 777 806 IPR000048 GO:0005515
Phco2g02992 965 SMART CG_1_2 12 130 IPR005559 GO:0003677
Phco2g02992 965 Pfam IQ calmodulin-binding motif 802 821 IPR000048 GO:0005515
Phco2g02992 965 Pfam IQ calmodulin-binding motif 780 797 IPR000048 GO:0005515
Phco2g02992 965 Gene3D Immunoglobulins 363 458 IPR013783 -
Phco2g02992 965 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 909 - -
Phco2g02992 965 SMART iq_5 799 821 IPR000048 GO:0005515
Phco2g02992 965 SMART iq_5 716 738 IPR000048 GO:0005515
Phco2g02992 965 SMART iq_5 776 798 IPR000048 GO:0005515
Phco2g02992 965 SUPERFAMILY Ankyrin repeat 570 661 IPR036770 -
Phco2g02992 965 MobiDBLite consensus disorder prediction 490 509 - -
Phco2g02992 965 Pfam IPT/TIG domain 369 440 IPR002909 -
Phco2g02992 965 FunFam Calmodulin-binding transcription activator 2 776 824 - -
Phco2g02992 965 ProSiteProfiles Ankyrin repeat region circular profile. 599 625 - -
Phco2g02992 965 SUPERFAMILY E set domains 369 453 IPR014756 -
Phco2g02992 965 Gene3D - 777 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02992 Phco-Chr2 58673218 58683217 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Phco2g02992 CG-1 4.4e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02992 2 58673218 58683217 Phco4g02008 4 39870389 39879511 PCT