Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02987 ATGGAGTGGAATGCAAAATCTCTCGGACAATGGGACTGGGAGCACTTGTTCTTCTTCAATACAAAAGCAACAGAAAATCCCAGGTTACCACCAACTGATTGTAGCAACGAAGCAGATCGAGAAATCAATGTTGGGATGTTGTATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAGTACATGCTTCTTCACCAAGGAGCTCAAAATCAGCTTCTAACAATTCATCCTCAAATGGGGATAGCAAGGCATCGGTATTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAATTGTGCAGTGGAGAGCCAGTTGAAATATCTCAATCGGCAGAGCCTTCTCCAGTCTCTGGGGAACCCCTTCTGACTCTGAAGCTTGGCAAACGGTTGTACTTTGAGGATGTATGTGCAGGAAGTGATTCCAAGAAACCATCTTCCTTTGAGGTTCCCGTTTCATCAGGAAAGAAATATAAAACCAGTAGTCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTCTCATCTTCTAAAGATTACCATCGCAAACACAGAGTATGTGAAGCTCATTCCAAATCCCCTAAGGTGCTTATAGCTGGTTTGGAGCGCCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAAACGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCACCGCCTGACGCAATCCAATTAAATCCATCAGCTTCGTCTTCATCACCTTATGATGGAAGGCAAATAATGAGTCCATTTGCATTTTCAAGAACTGGTGCAAACTTGGCGTGGCAGGATATGCACAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTTCCAAAGCCTGCAAAAGCCATCAATAAGATACCGAGTATTGTCTCTATGTTTTCTGATGATTCTAGTGGCCTTCTAACATCCAGAAGTATAGCAGCGAAGACTATTGTTCCAGGTTTAGAAGATCCGAATCCCATTACTTCGTGTGATCCAAATGGTGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGGTTCATATGAAACTAAGTCGCTATCTCTGGAACGCTCCTCTCGAACAAGTGGTATCACTCAGCCCATAACACAATCAATGACGCACCATCACCAGCGCTTACCATTTGCTTCCTCTTCAGAATATTGGCACACTGATCATCAACAACAACCATCCCCTTCCACCATGACCATGTGTATCTCATTCTCAGATTATGATACCAACAACCGTTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGACTCGGGTTTTCCATGCAACAATCTGGATTGA 1374 0.4461 MEWNAKSLGQWDWEHLFFFNTKATENPRLPPTDCSNEADREINVGMLYPSGGSACSGSELVHASSPRSSKSASNNSSSNGDSKASVLTLEGSQDDSTGKKELCSGEPVEISQSAEPSPVSGEPLLTLKLGKRLYFEDVCAGSDSKKPSSFEVPVSSGKKYKTSSQNLQHPSCQVEGCGLDLSSSKDYHRKHRVCEAHSKSPKVLIAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPPPDAIQLNPSASSSSPYDGRQIMSPFAFSRTGANLAWQDMHSSKLPQTKDFLPKPAKAINKIPSIVSMFSDDSSGLLTSRSIAAKTIVPGLEDPNPITSCDPNGAQDVNRALSLLSSNSWGSYETKSLSLERSSRTSGITQPITQSMTHHHQRLPFASSSEYWHTDHQQQPSPSTMTMCISFSDYDTNNRFQDFQLLSAPYDSGFPCNNLD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02987 457 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
Phco2g02987 457 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Phco2g02987 457 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 399 IPR044817 GO:0003677
Phco2g02987 457 MobiDBLite consensus disorder prediction 57 93 - -
Phco2g02987 457 MobiDBLite consensus disorder prediction 148 164 - -
Phco2g02987 457 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Phco2g02987 457 Pfam SBP domain 172 245 IPR004333 GO:0003677
Phco2g02987 457 MobiDBLite consensus disorder prediction 235 265 - -
Phco2g02987 457 MobiDBLite consensus disorder prediction 54 121 - -
Phco2g02987 457 MobiDBLite consensus disorder prediction 143 164 - -
Phco2g02987 457 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02987 Phco-Chr2 58651641 58653858 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco2g02987 SBP 1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02987 2 58651641 58653858 Phco2g02987 2 58651641 58653858 ECH