Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02949 ATGTATTTGTCGGAGAAGCCGCGTCCAATCGACTTCTACAAGGAGGAAGGCGCGCGCGACATGATGATCGAGGTGGTCTCCAACGGCGACCTACCGCCGCCGCCGCACCACCCGCCGCCGATGATCCTCGGCGAGAGCAGCGGAGAAGACCCCGAGGTGGAGATCAAGGCCCCCAAAAAACGGGCGGAGACGTGGGTGCAGGACGAGACGCGCTCGCTCATTGGCCTCCGCCGCGAGATGGACGCGCTCTTCAATACCTCCAAGTCCAACAAGCACCTATGGGAGCAGATATCCGCCAAGATGAGGGAGAAGGGTTTCGATCGGTCTCCCACCATGTGCACCGATAAGTGGCGCAACCTACTAAAGGAGTTCAAGAAGGCCAAGCACCAGGACCGTGGAGGGAGCGGCTCTGCCAAGATGTCATATTACAAGGAGATTGATGAGATCCTCAGAGAGAGGAGCAAGAATGTGCAGTACAAGAGCCCCACTCCTCCGCCAAAGGTTGATTCTTTCATGCAGTTTGCTGATAAAGGTATTGATGATACTAGCATCTCTTTTGGACCTGTAGAAGCTACTGGAAGACCAACACTCAATCGTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGACGCTGTTGCAGCTAGTGGAGTCCCTCCTTGGAATTGGAGAGAGACTTCTGGAAATGGTGGAGAAAGCCAGTCATGTTGTGGAAGGGTTATATCAGTTAAATGGGGTGATTATACAAGACGAATAGGTATTGATGGTACTCCAGAAGCCATCAAAGAGGCAATCAGGGCTGCTTTTAGGTTGAGAACTAAGCGCACATTTTGGTTGGAGGATGAAGACCAGATCATCCGAAGTATTGACCGTGAAATGCCTATAGGAAGTTACACTCTTCACCTTGATGAAGGAATGGCCATTAAGTTATGTCTGTATGATGAGTCCGAGCATCTTCCTGTGCATACTGAAGATAAGGTATTTTACACTGAAAATGATTACCGTGATTTTCTGACCCGCCGGGGTTGGGTATGTCTAAGAGAATTTGACGGATATAGAAATATTGACAACTTGGATGATCTTCGACCTGGTGCCATATATCGTGGTGTGAGTTGA 1131 0.4996 MYLSEKPRPIDFYKEEGARDMMIEVVSNGDLPPPPHHPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERSKNVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEATGRPTLNRERSLDHDGHPLAITTADAVAASGVPPWNWRETSGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPIGSYTLHLDEGMAIKLCLYDESEHLPVHTEDKVFYTENDYRDFLTRRGWVCLREFDGYRNIDNLDDLRPGAIYRGVS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02949 376 PANTHER FI21293P1 45 350 - -
Phco2g02949 376 SMART sant 61 123 IPR001005 -
Phco2g02949 376 Pfam Myb/SANT-like DNA-binding domain 64 149 IPR044822 -
Phco2g02949 376 Gene3D - 65 127 - -
Phco2g02949 376 FunFam trihelix transcription factor GT-1 65 127 - -
Phco2g02949 376 MobiDBLite consensus disorder prediction 26 52 - -
Phco2g02949 376 ProSiteProfiles Myb-like domain profile. 57 121 IPR001005 -
Phco2g02949 376 CDD GT1 63 128 - -
Phco2g02949 376 MobiDBLite consensus disorder prediction 185 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02949 Phco-Chr2 58404373 58408529 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco2g02949 Myb_DNA-bind_4 1.9e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02949 2 58404373 58408529 Phco2g02949 2 58404373 58408529 ECH