Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02928 ATGCATGCCAACTGTATCTACTTCTGGGAAAAAAGTGGTTCAACTTTCTGTATATGTAACTTTTTAGACATTTTTTTGTACCACAACCTTAGCTTGTGTTCACAACACAAACCATTCACTTTGTGGTTTCCTACGTTACCAAAGTTGACTGATGAGTGCCTCTTAGAAAGATCTAACAGTACTATATTGAGGAGGATAGCCCTGATCACATGGTGTGGAAAGAAAACAGATTTATGTATCGTCATTGGTAATTGGAATCACGTAGTTGAAAGTTGGGACCATTATCTGGGACAAGCATCTTTAATGGCTTGTGTGAGCATTGATGAATCAGACACACAGTGTCTATTGCTTAGACCGATTGATGAATTTTTCTCTGACATGCAAGGCAGAACTCACAACTGTACAAATTCTCACTTTATATTATACATTATGGCATGTTCATTCACATTTATCTTCCACCTTTTGCTTCTTTCCCAATCTGTGATTTATGTTTCTCCTTCTCCTGTTCAAGATCCTGAATTGGTGGTCCAGGAAGTGGAAAAGAGCATTAATGGGTCGAGGAGAAACTTGGGGTATCTTTCTTGTGGGACGGGGAACCCCATTGATGACTGTTGGAGGTGCGATCCCAACTGGGAAGGGAACCGCAAGCGTTTAGCTAGTTGTGCTATTGGGTTCGGCAAGAATGCCATTGGTGGAAAAGATGGCAAACTATATGTGGTCACTGACTCCAGTGATAACCCTATGAACCCTAAACCAGGTACATTGAGACATGCTGTTATCCAACAAGAGCCTTTGTGGATCATTTTCAAGCATGACATGGTGATCAAGCTACACATGGATCTCCTTGTTAATTCTTACAAAACCATTGATGGAAGAGGAGCAACTGTCCACATTGCTGGAGGGCCTTGCATTAAAGTGCACAAGAAGAGGAATATCATAATTCATGGAATACACATTCATGATTGCAAACGAGGTGGCAGTGGATATGTGAGTGATTTTCCTAACCATCGCAGTTGGAGTGCAAGATCGGACGGTGATGGGATCACGATCTTTGGTGGGAGTCATGTTTGGGTGGACCATTGCTCCTTGTCAAACTGTTTTGATGGCCTGATTGATGTTGTTCATGGGTCAACGGCCATCACCATTTCCAACAATTATATGACACACCATAACAAAGTCATGCTCTTGGGCCACAGTGATTCCTATAAAGATGACAAGAATATGCAAGTCACCATAGCCTTCAACCATTTTGGAGAAGGGCTTGGAGGGAGAATGCCTAGATGCAGGTTTGGATACTTTCATGTGGTGAACAACGATTACACACATTGGCAGCATTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAATAGATTTCTTGCTCCAAATAATGAAGACCATAAAGAGGTGACGAAACATTTTAAATCATCAAAAGGAGAGTGGAGGAAATGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGCGCCTTCTTCACACCGTCCGGGGCAGGAGCAACAGCTAGATATGATAGGGCGTCAAGCATGGCAGCAAGACCACCTCTGCTTGTGGCTTCAATCACAGCGGGGGCTGGTGCTCTTAAATGCAAAAATGGCCACCTATGCGGGTAG 1644 0.4307 MHANCIYFWEKSGSTFCICNFLDIFLYHNLSLCSQHKPFTLWFPTLPKLTDECLLERSNSTILRRIALITWCGKKTDLCIVIGNWNHVVESWDHYLGQASLMACVSIDESDTQCLLLRPIDEFFSDMQGRTHNCTNSHFILYIMACSFTFIFHLLLLSQSVIYVSPSPVQDPELVVQEVEKSINGSRRNLGYLSCGTGNPIDDCWRCDPNWEGNRKRLASCAIGFGKNAIGGKDGKLYVVTDSSDNPMNPKPGTLRHAVIQQEPLWIIFKHDMVIKLHMDLLVNSYKTIDGRGATVHIAGGPCIKVHKKRNIIIHGIHIHDCKRGGSGYVSDFPNHRSWSARSDGDGITIFGGSHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYKDDKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQHYAIGGSSSPTIFSQGNRFLAPNNEDHKEVTKHFKSSKGEWRKWNWRSEGDLMLNGAFFTPSGAGATARYDRASSMAARPPLLVASITAGAGALKCKNGHLCG 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02928 547 Gene3D - 198 539 IPR012334 -
Phco2g02928 547 PRINTS Pollen allergen Amb family signature 280 296 IPR018082 -
Phco2g02928 547 PRINTS Pollen allergen Amb family signature 344 365 IPR018082 -
Phco2g02928 547 PRINTS Pollen allergen Amb family signature 221 238 IPR018082 -
Phco2g02928 547 PRINTS Pollen allergen Amb family signature 517 540 IPR018082 -
Phco2g02928 547 PRINTS Pollen allergen Amb family signature 424 443 IPR018082 -
Phco2g02928 547 PRINTS Pollen allergen Amb family signature 446 465 IPR018082 -
Phco2g02928 547 PRINTS Pollen allergen Amb family signature 244 269 IPR018082 -
Phco2g02928 547 PRINTS Pollen allergen Amb family signature 488 512 IPR018082 -
Phco2g02928 547 PANTHER PECTATE LYASE 18-RELATED 170 543 IPR045032 GO:0030570
Phco2g02928 547 FunFam Pectate lyase 198 539 - -
Phco2g02928 547 SUPERFAMILY Pectin lyase-like 183 540 IPR011050 -
Phco2g02928 547 Pfam Pectate lyase 283 463 IPR002022 -
Phco2g02928 547 SMART amb_all 272 469 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02928 Phco-Chr2 58260442 58266411 Dispersed/Wgd