Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02898 ATGAAGAGACTTAGCAGCAGCTCAGATTCTTCTTCCTCTCCCCTCATCACAATTTGTCCAACACCAGAGGAACATAGTACGAGAAACTGCCAGCAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTTGAGGGACTTGACGAGGAAGGTTGTGTTGAAGAAGTGGGACATCAATCTGAGAAGAAACGTCGACTAAGTGTAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCCGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGTTGCAACCTAGACAAGTAGCAGTTTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTTCTCAAAGCCAATTTTGATGCTCTCAAGCTTAACTATGACACCCTCAATCACGACAACGAAGCCTTACGGAAGCAGATAAAGGAGCTTAAACTGAGGTTGGAAGAAGAGAAGAGTGGGAGCGGGGTTTCCGTGAAGGAGGAGATAATGATGCCAGACTCGGAAGACAAAACAACGATGGAACAGAGTAAGAGCGAACCTAGTTGGGAATCCGAGGATCAGTTGAACTACGAGTGTTTCAACAACAACAACAACGATTGTTTCGGAGGCGCTTCGCTCTTCCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCAATCTTGAACGAAGAGAACAACAACTGCAGCCCCATAACTGAAGATCTCTTGCTGTCGCCGAAATCTTCCTCAATGAACTGTTTGCAGTTCCAGAAAGCGTATCAGACGCAGTACGTGGTGAAGATGGAGGAGCACAATTTCTTGAGCGCGGACGAGGCCTGCAATTTCTTTTCGGATGAACAAGCTCCAACATTGCAGTGGTGGAACTGA 909 0.4708 MKRLSSSSDSSSSPLITICPTPEEHSTRNCQQHVYGREFQSMMLEGLDEEGCVEEVGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKLRLEEEKSGSGVSVKEEIMMPDSEDKTTMEQSKSEPSWESEDQLNYECFNNNNNDCFGGASLFPVDFKDGSSDSDSSAILNEENNNCSPITEDLLLSPKSSSMNCLQFQKAYQTQYVVKMEEHNFLSADEACNFFSDEQAPTLQWWN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02898 302 FunFam Homeobox-leucine zipper protein HAT5 55 119 - -
Phco2g02898 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 240 IPR045224 GO:0003700
Phco2g02898 302 SUPERFAMILY Homeodomain-like 47 119 IPR009057 -
Phco2g02898 302 Gene3D - 56 124 - -
Phco2g02898 302 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Phco2g02898 302 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Phco2g02898 302 Coils Coil 130 164 - -
Phco2g02898 302 CDD homeodomain 62 118 IPR001356 GO:0003677
Phco2g02898 302 SMART HOX_1 60 121 IPR001356 GO:0003677
Phco2g02898 302 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Phco2g02898 302 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Phco2g02898 302 Pfam Homeobox associated leucine zipper 117 158 IPR003106 GO:0006355|GO:0043565
Phco2g02898 302 MobiDBLite consensus disorder prediction 1 23 - -
Phco2g02898 302 Pfam Homeodomain 62 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02898 Phco-Chr2 58095200 58096756 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco2g02898 Homeodomain 2.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02915 4 50325040 50326403 Phco2g02898 2 58095200 58096756 PCT