Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02880 ATGTCCAACTCTAACTACCCAAACGCAGATCCGACCCTAAAATTTAAGTCCCAGGATCCAAATACGACTGCAAACCCTCAGCTTCCGCTTCAGAACCTCTCCCAGGTTCGGACCAGAATTGATTCTCTACAGCACTTCCTATCTCAATCCATCAACACCAACACTCCCCTCACCACCGATCAAATCAACATGGTCTCCACCCACATCATCTCCTCCATCCACCAAATCATCGTCAACGGCGCCGCCCTCGTAACTTACTCCCAACATTCCGCCGCCGCCGTCACACAAGATACATCGCCGTATCCGAAGCCGGAACCCTCTGCCACCTACAAACATAAGCAACTACTCGATTCCAAACTCGAACCTCCCGAGGACGACGATGGTGTGGAAGACGACGTCGTGGATTGCGAAATCGTGGAGCTCGACGCCGTGGAAATCCTCGAGGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGCTTCCGGCGCGACGCGAATCTCCGCATGCACATGCGCGCGCACGGGGACCAGTTCAAGACGCCGGAGGCACTGGCGAAGCCGTCGGAAACCGGCGCGGCGCGGCGCGCGATGCGGTTCTCTTGTCCGTTTGAAGGCTGTAACCGGAACAAGCTTCACCGGCGGTTCCGGCCTCTGAAGTCGGTGGTGTGCTTGAAGAACCACTTCAAGCGGAGCCACTGTCCGAAGATGTACTCGTGCACGCGGTGCCACAGGAAGCACTTTTCGGTGCTCTCGGATTTGAAGAGCCACGCCAAGCACTGCGGAGAGTGCAGGTGGAAGTGCACGTGCGGGACCACGTTCTCGAGGAAGGACAAGTTGTTCGGCCACATTGCGCTGTTTGAGGGCCACGCGCCTGCTCTCGCGTGCGACGAAGAGGATAAAGGGAAGCAAGTGGCGGTGGGTGACGAGGAAAATCCGAGGTTGACGACTGAGAGTGGATTTGAATTGGGTAATTGTTTTGGGGATGAGGAGTTGCCGGAAGGGTTTTTTGATGATTTTGGGTCCATTGATGACTACTGTTTAAGGGAAGTGTTAGGGTTTCCTAGTAATTGA 1071 0.5528 MSNSNYPNADPTLKFKSQDPNTTANPQLPLQNLSQVRTRIDSLQHFLSQSINTNTPLTTDQINMVSTHIISSIHQIIVNGAALVTYSQHSAAAVTQDTSPYPKPEPSATYKHKQLLDSKLEPPEDDDGVEDDVVDCEIVELDAVEILEEHIHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALAKPSETGAARRAMRFSCPFEGCNRNKLHRRFRPLKSVVCLKNHFKRSHCPKMYSCTRCHRKHFSVLSDLKSHAKHCGECRWKCTCGTTFSRKDKLFGHIALFEGHAPALACDEEDKGKQVAVGDEENPRLTTESGFELGNCFGDEELPEGFFDDFGSIDDYCLREVLGFPSN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02880 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Phco2g02880 356 FunFam Zinc finger 45-like 149 175 - -
Phco2g02880 356 SUPERFAMILY beta-beta-alpha zinc fingers 148 175 IPR036236 -
Phco2g02880 356 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 18 304 IPR044300 GO:0010044|GO:0010447
Phco2g02880 356 SMART c2h2final6 237 259 IPR013087 -
Phco2g02880 356 SMART c2h2final6 152 174 IPR013087 -
Phco2g02880 356 SMART c2h2final6 199 232 IPR013087 -
Phco2g02880 356 Gene3D Classic Zinc Finger 152 175 - -
Phco2g02880 356 MobiDBLite consensus disorder prediction 1 28 - -
Phco2g02880 356 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02880 Phco-Chr2 57965691 57966761 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g02880 None None None