Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02842 ATGAATTCAGCATCCCCGCAGTTCGTTTCCGCGAGAAGGATGAGTGTGTACGATCCAATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAAGTGCATCCATGCCTCTAATAGATGAGGCAGACATGAAGTTAGATAGTCAGTCAGAGGATGCTTCTCACGGTATTCTGGGAGCACCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAGATACAGAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTTTGAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTCGAACGTGCAAGACAGCAGGGAATGTACATAGGTGGTGGGTTGGACTCTAATCATATGGGTTTTGCTGGATCGGTAAATTCAGGAATTACAACCTTTGAGATGGAGTACGGACACTGGGTGAACGAGCAAAATAGGCAAATCACAGAACTGAGAACTGCTTTAAATGCTCATATTGGTGACATGGAGCTCAGGATTCTAGTAGATGGTATGATGAACCACTACGCTGAGATCTTTCGCATGAAATCTGCTGCCGCAAAGGCAGACGTGTTCTACGTCATGTCTGGTATGTGGAAAACAACAGCTGAAAGATTTTTCCTGTGGATCGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGGCCCCTGATTGAACCCCTCACAGAGAAACAACGGTTGGATATCTATAACCTAGGACAATCATGTCAGCAAGCAGAAGATGCCCTATCACAAGGTATGGACAAACTCCGGCACACACTAGCTGATAGTGTAGCAGCTGGACAGTTCATGGAGGGAACGTACATTCCACAGATGACTTCTGCAATGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGGAACCTTGCAGCAGATGTCTCGAATACTTACAATCCGTCAGGCGGCTCGGTGCTTGCTTGCTTTGGGAGAATATTTCCAGCGCCTGAGGGCTTTGAGCTCACTGTGGTCTAACAGACCCCGTGAACCTGCTTAG 1089 0.4702 MNSASPQFVSARRMSVYDPIHQISMWGEGFKSNGNLSASMPLIDEADMKLDSQSEDASHGILGAPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNHMGFAGSVNSGITTFEMEYGHWVNEQNRQITELRTALNAHIGDMELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIEPLTEKQRLDIYNLGQSCQQAEDALSQGMDKLRHTLADSVAAGQFMEGTYIPQMTSAMEKLEALVSFVNQADHLRQGTLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02842 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Phco2g02842 362 PANTHER TRANSCRIPTION FACTOR TGA9 3 360 - -
Phco2g02842 362 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
Phco2g02842 362 Gene3D - 77 126 - -
Phco2g02842 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Phco2g02842 362 CDD bZIP_HBP1b-like 78 130 - -
Phco2g02842 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Phco2g02842 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Phco2g02842 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Phco2g02842 362 Coils Coil 97 124 - -
Phco2g02842 362 FunFam BZIP family transcription factor 77 126 - -
Phco2g02842 362 Pfam bZIP transcription factor 76 112 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02842 Phco-Chr2 57681114 57685273 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco2g02842 DOG1 1.4e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02842 2 57681114 57685273 Phco2g02842 2 57681114 57685273 ECH
Phco4g02989 4 51015156 51022466 Phco2g02842 2 57681114 57685273 PCT