Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02816 ATGGCCTATGGACTCTACAACTTTAGAAGACTTGTCTTTCAGGAAAACAAAATACTCAATTGGGAAAGAAGAGATAAAGGATGTGTTGGATTTGCATATAAAGATGTTGGACCAATTAGCTCCTCCCCCTCACCACGTGACACTTCAGTCAAACTTGGAGATGCCACCAGCAGCATGTTCATGTCAGCCAAGTGGAAGCATGAGAGCATGGAGGGAGAAGCAGGAGAGGATGATGATGGAGCCGTTGGAGTGGAGAAAACCAACCTTAACTCTTGTCAATTTTCACAACATGAAGTAAGAAATGCAGACCATGTTTCTGACAAGAAGAAAGAAAGATGGAAGAAGACTCCGTCCAAGACGCACAGCAACCCGTGTTTTTTTTTGTTTCTCTTCTGGGTGTGGACTCTGCTTCTCTCCACATGTTTCAAATCAGTTTTGTGTGAAGATGAGGGTTGGGATGGAGTGGTTGTGACAGCATCAAACTTCTTAGCACTTCAAGCGTTCAAGCAGGAGTTGGTTGATCCTGAAGGCTTCTTGCGGAGCTGGAATGACAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGTATAAAGTGTGCTAAGGGAGAGGTTATTGTAATCCAGCTTCCGTGGAAGGGGTTGAGGGGGCGTATCACTGATAAGATTGGCCAGCTTCAAGGTCTTAGGAAGCTCAGTCTTCATGATAATCAAATTGGTGGTTCAATCCCTTCCACTTTTGGACTTCTTCCTAACCTTAGAGGTGTTCAGTTATTCAACAATAGGCTAACAGGTTCCATCCCTTCTTCCTTAGGTTACTGCCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTGCTCACGGGAGCAATCCCTTATAGTCTTGCCAATTCCACCAAACTTTATTGGCTTAACTTGAGTTTTAACTCCTTCTCTGGTCCTTTACCAGCTAGCCTAACTCACTCACTTTCTCTCACATTCCTTTCTCTTCAACATAATAATCTATCTGGTCCCCTTCCTAACTCTTGGGGTGGGAGTTCCAAGAATGATGAGTTCTTTAGGCTTCGAAATTTGATCCTAGATCATAACTTCTTCACCGGAAACGTTCCTTCTTCTTTGGGTGGCTTAAGAGAACTGAATGAAATTTCCCTTAGTAATAATAGGTTTAGTGGAGCTATACCGAATGAAATAGGAACTCTTTCTCGGCTTAAGACACTAGACATTTCTAATAATGCCTTGAATGGGAGCTTGCCCGCTACCCTCTCTAATTTATCCTCGCTTACACTTCTGAATGTTGAGAACAACCTCATTGAAAATCAAATCCCTGGAACTTTAGGGAGTTTGCACAATCTTTCTGTTCTAATTTTGAGTAGAAACCAATTTACAGGGCATATTCCTTCAAGTATTGCAAACATTTCCACTCTTACGCAGCTTGATTTTTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTAACAGTCAGCGTAGTCTTGATCTCTTCAATGTTTCTTACAACAGCCTCTCAGGTTCTGTTCCTCTTCTACTTGCCAGGAAATTCAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGATACAGCCCCTCAACACCATGTCCTTCACAAGCTCCATCAGAAGGAGTCATTGCCCCACCTCATGAAATGTCAAAACACCACCATCATAGGAAGCTAAGTACCAAAGACATTATTCTCATTGTAGCGGGAGTTCTTCTCATAGTCCTGATCATACTTTGTTGCATCCTTCTCTTCTGTCTGATCAGAAAGAGATCAACATCAAAGACCGAGAAGGGCAGAGGTCCAGGGAGAAGTGGCACTATGAGGACAGAAAAAGGAATCCCTCATGTTGCTGCTGGTGATGTTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTCCATTTTGATGGACCGATAGCTTTTACAGCTGACGATTTATTGTGTGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTATATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGGGAAAAGATCGCTAAAGGTCACAGAGAATTTGAATCAGAAGTCGGTGTTCTAGGAAAAATTAGACACCCCAATGTTTTGGCTCTGAGGGCGTATTACTTGGGACCCAAAGGGGAGAAGCTTCTGGTTTTTGATTACATGCCTAAAGGAAGTGTTGCTTCTTTCCTGCACGGTAGTGGAACTGAAACATCCATTGACTGGCAAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGTTTGTTGTACCTCCATTCCCAGGAGAACATTATACATGGAAACCTCACATCCAGCAATGTATTGCTTGACGAGAATACAAATGCTAAAATAGCGGATTTTGGTCTTTCTAGGCTGATGACAACTGCTGCTAATACCAACGTGATAGCTACTGCTGGAGCATTGGGATACAGGGCACCAGAACTCTCAAAGCTGAAGAAAGCCAACTCCAAAACTGATATCTATAGTCTAGGTGTTATCTTGTTAGAACTCCTAACGAGGAAGTCACCTGGGGTGTCTATGAATGGAGTAGATTTACCTCAGTGGGTTGCCTCTATTGTGAAAGAGGAGTGGACAAATGAGGTTTTTGATGCAGACTTAATGAGAGATGCTTCAACAGTTGGCGATGAGTTGCTAAATACATTGAAGCTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCATCAAGTGCTACAGCAGCTGGAAGATATTAGACCAGAGAGATCAGTCACAGCCAGTCCTGGGGATGATTCTATAATATAG 2826 0.4331 MAYGLYNFRRLVFQENKILNWERRDKGCVGFAYKDVGPISSSPSPRDTSVKLGDATSSMFMSAKWKHESMEGEAGEDDDGAVGVEKTNLNSCQFSQHEVRNADHVSDKKKERWKKTPSKTHSNPCFFLFLFWVWTLLLSTCFKSVLCEDEGWDGVVVTASNFLALQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAKGEVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNQIGGSIPSTFGLLPNLRGVQLFNNRLTGSIPSSLGYCPLLQSLDLSNNLLTGAIPYSLANSTKLYWLNLSFNSFSGPLPASLTHSLSLTFLSLQHNNLSGPLPNSWGGSSKNDEFFRLRNLILDHNFFTGNVPSSLGGLRELNEISLSNNRFSGAIPNEIGTLSRLKTLDISNNALNGSLPATLSNLSSLTLLNVENNLIENQIPGTLGSLHNLSVLILSRNQFTGHIPSSIANISTLTQLDFSLNNLSGEIPVSFNSQRSLDLFNVSYNSLSGSVPLLLARKFNSSSFVGNIQLCGYSPSTPCPSQAPSEGVIAPPHEMSKHHHHRKLSTKDIILIVAGVLLIVLIILCCILLFCLIRKRSTSKTEKGRGPGRSGTMRTEKGIPHVAAGDVEAGGEAGGKLVHFDGPIAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKIAKGHREFESEVGVLGKIRHPNVLALRAYYLGPKGEKLLVFDYMPKGSVASFLHGSGTETSIDWQTRMKIAQDMARGLLYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANTNVIATAGALGYRAPELSKLKKANSKTDIYSLGVILLELLTRKSPGVSMNGVDLPQWVASIVKEEWTNEVFDADLMRDASTVGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEDIRPERSVTASPGDDSII 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02816 941 FunFam Leucine-rich repeat receptor-like protein kinase 639 730 - -
Phco2g02816 941 ProSiteProfiles Protein kinase domain profile. 654 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02816 941 Pfam Leucine rich repeat 353 412 IPR001611 GO:0005515
Phco2g02816 941 Pfam Leucine rich repeat 227 286 IPR001611 GO:0005515
Phco2g02816 941 PRINTS Leucine-rich repeat signature 399 412 - -
Phco2g02816 941 PRINTS Leucine-rich repeat signature 276 289 - -
Phco2g02816 941 SMART LRR_typ_2 399 422 IPR003591 -
Phco2g02816 941 SMART LRR_typ_2 423 446 IPR003591 -
Phco2g02816 941 SMART LRR_typ_2 249 273 IPR003591 -
Phco2g02816 941 SMART LRR_typ_2 447 470 IPR003591 -
Phco2g02816 941 SMART LRR_typ_2 225 248 IPR003591 -
Phco2g02816 941 Gene3D Transferase(Phosphotransferase) domain 1 732 938 - -
Phco2g02816 941 Pfam Leucine rich repeat N-terminal domain 163 199 IPR013210 -
Phco2g02816 941 Gene3D Phosphorylase Kinase; domain 1 660 731 - -
Phco2g02816 941 Gene3D Ribonuclease Inhibitor 160 317 IPR032675 -
Phco2g02816 941 Gene3D Ribonuclease Inhibitor 416 541 IPR032675 -
Phco2g02816 941 Gene3D Ribonuclease Inhibitor 318 415 IPR032675 -
Phco2g02816 941 SUPERFAMILY L domain-like 199 536 - -
Phco2g02816 941 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 345 544 - -
Phco2g02816 941 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 158 343 - -
Phco2g02816 941 Pfam Protein tyrosine and serine/threonine kinase 657 922 IPR001245 GO:0004672|GO:0006468
Phco2g02816 941 CDD STKc_IRAK 660 925 - -
Phco2g02816 941 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 347 925 - -
Phco2g02816 941 FunFam Pollen receptor-like kinase 1 731 935 - -
Phco2g02816 941 SUPERFAMILY Protein kinase-like (PK-like) 658 926 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02816 Phco-Chr2 57514931 57521434 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco2g02816 PK_Tyr_Ser-Thr 5.4e-42 CL0016