Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02802 ATGCTTTTAAGCTTTTACTCCCAAACCAAGCAAGGAATTTGTAATCAAATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTGCTGAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCCAATGACCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGCGCTAGCAATGTTAGCAAAATGCTGCAGGAACTTCCTATTCAGCAGAGAGCAGATGCTGTGAGTAGTTTGGTGTATGAAGCACATGCAAGAGTTCGGGACCCTGTGTATGGTTGTGTTGGGGCCATATCCTATTTACAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCTGTGATGCCAAATCCAGAAATGGAAAACCCAGATCAGAAATCTTACCTTCTCCAGAATGAACTCCCTCAGTTTCTCAACTATGCCTCTTCTAGCAATGTAATTTATGATGCTGTCACAAGAGAGAGCATTTATGGACATGATATGGTTTCCTGA 546 0.4414 MLLSFYSQTKQGICNQMAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIQQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVMPNPEMENPDQKSYLLQNELPQFLNYASSSNVIYDAVTRESIYGHDMVS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02802 181 Coils Coil 101 121 - -
Phco2g02802 181 ProSiteProfiles LOB domain profile. 21 122 IPR004883 -
Phco2g02802 181 Pfam Lateral organ boundaries (LOB) domain 22 119 IPR004883 -
Phco2g02802 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02802 Phco-Chr2 57420199 57420999 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco2g02802 LOB 3.5e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02802 2 57420199 57420999 Phco3g00782 3 6477313 6478038 ECH
Phco2g02802 2 57420199 57420999 Phco2g02802 2 57420199 57420999 ECH
Phco2g02802 2 57420199 57420999 Phco3g00782 3 6477313 6478038 PCT