Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02791 ATGAAGGGTTATGAGCCCCGTTCAAGCTCTTCATGTGCAGCTTGCAAGTTATTGAAGAGAAGATGCGTACCTAATTGTATTTTTGCACCTTACTTTAGGTCTGATGAGTGTAAGAAGTTTGCCAAGGTGCACAAGGTATTTGGAGCCAGCAATGTGAGCAAGATCTTGATCGAAGTGTCAGAAGAGCAGAGGGAGGACACGGTGAATTCTCTGGCATATGAGGCTGAGGCAAGGCTGAGAGACCCGGTTTATGGATGCATTGGTGCCATAGCTCTCTTGCAGAGGAAGATGGTGGAGCTTCAACATGATCTGGCCATTGCTAAGGATCGTCTTGCACGTTGTCACGCTGCTGCTACTGTCCTCCCTTCTCCTGATATCTTGCATGCCCATGTTAGCCTGCCTCCATTCCCTGACTTTTGCACTTCCTCCAATGATTTCAATGATATCTTCTGCCACAGTTCATCATCTCAATTATTGAGCCGCCATGAAACGGTGGACGATTTCAATCAAATCCCATATATATTTTAA 528 0.4583 MKGYEPRSSSSCAACKLLKRRCVPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVSEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAATVLPSPDILHAHVSLPPFPDFCTSSNDFNDIFCHSSSSQLLSRHETVDDFNQIPYIF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02791 175 Coils Coil 90 110 - -
Phco2g02791 175 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Phco2g02791 175 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Phco2g02791 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02791 Phco-Chr2 57336908 57337435 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco2g02791 LOB 1.5e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02791 2 57336908 57337435 Phco2g02791 2 57336908 57337435 ECH