Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02787 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAAAACTACTATGATTCTGGCTGGCACATGGGCACCAGCTGGGCTCACAGTGATCATTCTTCTTCCTTTGCAGTACCTACACAAATACTGCCTCATGTCACTGACTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCACTTCCCATTGAAGGGGCTGCAGAAGAGAGAGCAATGAGTGCTTCCAAGAGTCACAGTCAAGCAGAGAAAAGACGCAGAGACAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTTATTCCCAAATCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCATGTCAAAGATCTAAAGAGAAAAGCCATGGATGTTAGCAGAGCTTTCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTGTGACCATGTTCAAGATGAAAGCTGTACTAAAGTGAACAAATTGAAGGAAAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCATCCAAGTCCTCAAAGGCTTGAGACTGACAGCAGTTAAAGCTGACATAGCCAGTGTAGGTGGCAGGATGAAAAGCATATTGGTGCTTTGTTCTAAGGATGGTGAAGAGGGTGTTTGCCTCACCACTCTCAAACAGTCCCTCAAATCTGCCGTCACCAAAATAGCTTCATCATCCATGACATCTAATTGTCCCACTAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCGTTGCCTACAGTAA 816 0.435 MGDKRLRNHGRNFRMVSIVTMENYYDSGWHMGTSWAHSDHSSSFAVPTQILPHVTDSASLQFGEFHSWPLPIEGAAEERAMSASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDHVKDLKRKAMDVSRAFTVPTEIDEVSIDCDHVQDESCTKVNKLKENIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRMKSILVLCSKDGEEGVCLTTLKQSLKSAVTKIASSSMTSNCPTRSKRQRFFLPSRCLQ 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02787 271 CDD bHLH_AtAIG1_like 77 154 - -
Phco2g02787 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 134 IPR036638 GO:0046983
Phco2g02787 271 MobiDBLite consensus disorder prediction 77 96 - -
Phco2g02787 271 PANTHER TRANSCRIPTION FACTOR BHLH30 73 265 IPR045847 GO:0003700|GO:0006355
Phco2g02787 271 Pfam Helix-loop-helix DNA-binding domain 85 131 IPR011598 GO:0046983
Phco2g02787 271 Gene3D - 76 140 IPR036638 GO:0046983
Phco2g02787 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 131 IPR011598 GO:0046983
Phco2g02787 271 SMART finulus 88 137 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02787 Phco-Chr2 57312069 57313177 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g02787 HLH 1.2e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02787 2 57312069 57313177 Phco2g02787 2 57312069 57313177 ECH
Phco2g02787 2 57312069 57313177 Phco3g00755 3 6256584 6257996 PCT