Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02780 ATGAAAACACTAACTTCCTCCTCTGTCACCCTCTGTCTTGTCGTCGCCGCCCTGCTTATACTTTCTCTACCACGCTCTTCCCATGGCCTCGGCTCCGGCTCCACCCTTGCCATCTCTGACGCCTCCTCCACCGTGTGCGCCGTCGTGGCACGCGAGTCCACGCGCCGCATTGAGTGTTACCGTCAGGGGCAGATTGCCTTCATCACTCCCAACGTTAGTTTTTCAACGATTTCGGGTGGGAGGAACTACTTCTGTGGTCTAAGGTCAAGTAACTCCAATTTACTATGTTGGAACACAAGCTCTTCCTTCGAAAGGAGAAGGCTTTACAACGATAGTTCTGTTCCATTGGAGAATCTAGCCGTTGGGGATACCCACGTTTGCGCCGCCGAGGTGGGCGATGGCGCGGTGAAGTGCTGGAGAACCGGTGACACGTTTCAGCTTCCTTCTGCGACTGATAAATTCGCTTCAATTTCATCTGGGACTGGCTTCTCTTGCGGAATTTTGAAGAATAGTTCTCGGGTTCGGTGCTGGGGAGACACCAGCGTTTCGGATTTATCGGAACGGATTGAGAGTGTATTTGGGAACATGTCCATGTTGAGTCTTGTCGCAGGTGGTTCACATGTTTGTGGATTGAACTCCACCGGGTTTTTGGTATGTGGAGGAAATAACGATTCTGGACAACGTGATTTTCCTCAAGGTGGGGCTTTTGAGTATTCTGGGTTGGCACTTGGAGCTGAACATGGTTGTGCTATAAGAGGATTGAATGGTTCGGTTGTGTGTTGGGGTGGCAATGGGAGTTTCTCGGTGAATAATGTTACTGAAGGAGTTTCCTTTGAGGTAATTGTTTCTGGGTCTAATTTTGTTTGTGGATTGACAACAAACAATTTGAAAGTGGTGTGTTGGGGTCCCGGCTGGTCAAATAGTTCGACGTTTGAGCTTCCTTTTTCAACTGTTCTTCCAGGGTCTTGTGTTCAATCTTCTTGTGGAGAGTGTGGTTCATATCTTGATTCTCAATCTCTATGCTCCGGCTCTGGTAACATTTGTAAACCAATGACCTGTAAGCCTCAAACAACAGCTCCGCCTCCGCCATCACTGTCACCGCCTCCACCAACAATGTCACCGCCGCCACCGCCACCGCCACCGCCACCGCCACCACCACCACCTTCGTCATCACGATCAAAGACCTTGACAAACGGGTTATTGGCATTTGCTATTATCGGTTCTGTGGGAGCTTTTGCCGGAATATGCACTATAGTTTATTGCTTGTGGAGTGGAGTTTGTTTTGGGAAGAAAAAAGTCCACAATTCCGTGCAGCCTACAATCACAAGAGGTAGCAGTGGTTCAAATGGGGGAGGTGCTTCTAATAATAGCAATTCTTCATTATCGTCTATGATTATGCGTCAGACTTCAATAATAATGAGGCGTCAGAGGAGTGGAACCTCATCAACAAAGCACCCAGACCGGGCTGAGGAGTTCACCCTGGCCGAGCTTGTGGCAGCCACCAACAATTTCTTACTTGAAAACAAGATTGGAGCTGGAAGCTTTGGTGTCGTGTACAAAGGCAAACTCGCGGATGGACGCGAGGTGGCTATCAAGAGGGGTGAAACTGGTTCCAAGATGAAGAAGTTTCAAGAGAAGGAAAGTGCATTTGAGTCTGAATTGGCCTTCTTGTCTCGCCTACACCACAAGCACTTGGTTGGACTTGTTGGGTTCTGCGAAGAGAAAGATGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGGGCGCTGTATGATCATTTGCATGACAAGAACAACGTGGAGAAGGGTAGCAGTGTGTTGAATTATTGGAAAATGAGGATCAAAATTGCTTTGGATGCTGCTCGGGGAATAGAATATCTTCATAATTATGCAGTTCCATCAATTATTCACAGAGACATCAAGTCTTCTAACATTCTTATTGATGCTACTTGGACGGCAAGAGTATCAGATTTTGGATTGTCTTTGATGAGTCCAGAACCTGACCGTGATTACCGACCAATGAAGGCAGCAGGAACCGTTGGATACATTGATCCTGAGTACTACGGTTTAAATGTATTGACGGCAAAGAGTGATGTGTATGGGCTTGGAGTTGTACTACTCGAACTTTTAACAGGAAAGAGAGCTATATTCAAGTATGGCGAAGATGGAGGCACCCCACTAAGTGTGGTGGACTTTGCAGTGCCTCGTATTTTGGCTGGAGAAATGGTGAAAATTTTGGATCCAAGGGTTGGACCACCCGATGGGAATGAGGTGGAGGCTGTGGAATTAGTGGCCTATACAGCTATCCATTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGGTCAATTTGGAGAGGGCTTTGGCTATTTGTGAGAGTAGCCATGATAGCATTTCCAGTGGCTCTATCTCTGTTGTTTCCGAATGA 2442 0.473 MKTLTSSSVTLCLVVAALLILSLPRSSHGLGSGSTLAISDASSTVCAVVARESTRRIECYRQGQIAFITPNVSFSTISGGRNYFCGLRSSNSNLLCWNTSSSFERRRLYNDSSVPLENLAVGDTHVCAAEVGDGAVKCWRTGDTFQLPSATDKFASISSGTGFSCGILKNSSRVRCWGDTSVSDLSERIESVFGNMSMLSLVAGGSHVCGLNSTGFLVCGGNNDSGQRDFPQGGAFEYSGLALGAEHGCAIRGLNGSVVCWGGNGSFSVNNVTEGVSFEVIVSGSNFVCGLTTNNLKVVCWGPGWSNSSTFELPFSTVLPGSCVQSSCGECGSYLDSQSLCSGSGNICKPMTCKPQTTAPPPPSLSPPPPTMSPPPPPPPPPPPPPPPSSSRSKTLTNGLLAFAIIGSVGAFAGICTIVYCLWSGVCFGKKKVHNSVQPTITRGSSGSNGGGASNNSNSSLSSMIMRQTSIIMRRQRSGTSSTKHPDRAEEFTLAELVAATNNFLLENKIGAGSFGVVYKGKLADGREVAIKRGETGSKMKKFQEKESAFESELAFLSRLHHKHLVGLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGSSVLNYWKMRIKIALDAARGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPEPDRDYRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKYGEDGGTPLSVVDFAVPRILAGEMVKILDPRVGPPDGNEVEAVELVAYTAIHCVNLEGKDRPTMADIVVNLERALAICESSHDSISSGSISVVSE 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02780 813 MobiDBLite consensus disorder prediction 358 391 - -
Phco2g02780 813 SMART serkin_6 504 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02780 813 FunFam serine/threonine-protein kinase-like protein CCR1 473 584 - -
Phco2g02780 813 ProSitePatterns Protein kinases ATP-binding region signature. 510 532 IPR017441 GO:0005524
Phco2g02780 813 SUPERFAMILY RCC1/BLIP-II 66 268 IPR009091 -
Phco2g02780 813 Pfam Protein kinase domain 507 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02780 813 ProSiteProfiles Protein kinase domain profile. 504 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02780 813 SUPERFAMILY Formin homology 2 domain (FH2 domain) 377 440 - -
Phco2g02780 813 Gene3D Phosphorylase Kinase; domain 1 464 584 - -
Phco2g02780 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Phco2g02780 813 Gene3D - 67 346 IPR009091 -
Phco2g02780 813 MobiDBLite consensus disorder prediction 440 460 - -
Phco2g02780 813 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 195 799 IPR044815 GO:0004674
Phco2g02780 813 MobiDBLite consensus disorder prediction 358 393 - -
Phco2g02780 813 FunFam Serine/threonine-protein kinase-like protein CCR4 585 807 - -
Phco2g02780 813 Gene3D Transferase(Phosphotransferase) domain 1 585 805 - -
Phco2g02780 813 SUPERFAMILY Protein kinase-like (PK-like) 481 789 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02780 Phco-Chr2 57231614 57234055 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Phco2g02780 Pkinase 4.5e-43 CL0016