Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02753 ATGGAAGAGGGCATGTCAGATTTTTGTTTTAGAGGTGAAAATGTTGTTGGTAATAGAGGTAGTGCTACTGGCACCAAGTGTGGGCGTTGGAATCCCACAACTGAGCAGGCTAAGGTTCTGACTCAACTGTTCAGTTCTGGACTCCGTAACCCAAGCACTGATCAGATTCAAAAGATCTCTAATCAGCTCAGCTTTTATGGTAAGATTGAGAGCAAAAATGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGAAAGACAAAAGCGTCGCAAGGTTGATAAGGATGTGATTCGTAGTGAAAACTCAATCTCCATGAATTTTTTCACACAAAATTTTACTCAGCTATATGACGTTTCTGAGACTGCGAAAGTCACCGAGACCCTTCAACTATTCTCCCTGAACTCTTTTGGTGAATCAGAATCAAAGAATATGAGGGTTCATACAAGTGACTGCAGGAATAATACAATGTTTTCATTCACAGAGGAGGAACAAATGAATCATCCACCATTAGATCTTCACTTGAGTTTCACAAAAGTAGAAGAAAAGGAAAAGGAAAAGCAGGTTGGTGAGGCGCAGAAGAGAAGAGAGGAGAGGGAGAAGAAAAGAATTGAAGTTGGAGGAAGAAGAAGAGGAAGAAAGAGGAAAATCGGAGTTTCTGAAATTGCAATGGACGTGATAAAGACGCAGCAAATCTCATCTCGACCAATCGAGAAGGTCGTGGTTCACCCTCTCGTGCTTCTTAGCATCGTCGACAACTACAACAGAGTCGCCAAGGACACTCGCAAGCGCGTTGTCGGCGTTTTGCTTGGCTCTTCTTTCAGAGGCACGGTCGACGTTACGAACAGCTACGCCGTGCCGTTTGAAGAAGATGACAAGGATCCCAGCATTTGGTTTCTTGATCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGTGAAAATGACCTTGACATTCATGGCTTATTTAACGATTATGTTCCAAATCCTGTCTTGGTTATCATTGATGTTGAACCCAAGGAATTGGGAATCCCAACAAAAGCATATTACGCCGTTGAAGAGGTTAAAGAGAATGCCACCCAAAAAAGCCAAAAGGTCTTTGTACATGTGCCATCAGAGATTGCAGCTCATGAAGTTGAAGAAATAGGAGTGGAACATTTGCTTAGAGATGTAAAAGATACAACCATTAGCACCCTTGCGACTGAGGTAAGTGCAAAACTTACAGCCTTGAAAGGTTTGGATGCTAGACTTAAAGAGATAAGGAGTTACCTTGACCTTGTTATTGATGGAAAACTTCCATTAAACCATGAGATCCTGTACCATCTGCAGGACGTGTTTAACCTGCTACCGAATCTCAATGTTGCTGATCTTATCAAGGCGTTTGCAGTGAAAACGAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTTAACAAAGAACATGAGCGGGCAGAAGACTCAAAGTCAGTTACAGTGCCGAGTGCAGCTGCATAA 1596 0.4198 MEEGMSDFCFRGENVVGNRGSATGTKCGRWNPTTEQAKVLTQLFSSGLRNPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVDKDVIRSENSISMNFFTQNFTQLYDVSETAKVTETLQLFSLNSFGESESKNMRVHTSDCRNNTMFSFTEEEQMNHPPLDLHLSFTKVEEKEKEKQVGEAQKRREEREKKRIEVGGRRRGRKRKIGVSEIAMDVIKTQQISSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFRGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVTVPSAAA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02753 531 Gene3D - 26 93 - -
Phco2g02753 531 MobiDBLite consensus disorder prediction 181 204 - -
Phco2g02753 531 Gene3D Cytidine Deaminase, domain 2 231 416 - -
Phco2g02753 531 ProSiteProfiles MPN domain profile. 239 376 IPR037518 -
Phco2g02753 531 SUPERFAMILY Homeodomain-like 28 90 IPR009057 -
Phco2g02753 531 SMART pad1_6 238 372 IPR000555 GO:0005515|GO:0008233|GO:0008237
Phco2g02753 531 Coils Coil 179 201 - -
Phco2g02753 531 CDD MPN_RPN7_8 237 517 IPR033858 GO:0005838
Phco2g02753 531 CDD homeodomain 29 89 IPR001356 GO:0003677
Phco2g02753 531 FunFam 26S proteasome non-ATPase regulatory subunit 7 231 416 - -
Phco2g02753 531 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 237 346 IPR000555 GO:0005515|GO:0008233|GO:0008237
Phco2g02753 531 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 234 512 - -
Phco2g02753 531 FunFam WUSCHEL-related homeobox 11 26 94 - -
Phco2g02753 531 SMART HOX_1 25 92 IPR001356 GO:0003677
Phco2g02753 531 MobiDBLite consensus disorder prediction 181 211 - -
Phco2g02753 531 Pfam Homeodomain 27 87 IPR001356 GO:0003677
Phco2g02753 531 ProSiteProfiles 'Homeobox' domain profile. 23 88 IPR001356 GO:0003677
Phco2g02753 531 Pfam Maintenance of mitochondrial structure and function 396 507 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02753 Phco-Chr2 56994060 56999738 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Phco2g02753 MitMem_reg 2.6e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02753 2 56994060 56999738 Phco3g00717 3 5883607 5884462 ECH
Phco2g02753 2 56994060 56999738 Phco2g02753 2 56994060 56999738 ECH
Phco2g02753 2 56994060 56999738 Phco3g00717 3 5883607 5884462 PCT