Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g02744 | ATGGAATTGGAGACCCCATATCCAAGTTGTTTTATGTCAAATTCAAATTGGTTTGTTCAAGAGAGTGACTACACAGAATGGACGACAGAAGAGAATAAGAAGTTCGAAAGTGCCCTTGCCATATATGATAAGGATACCCCAGACAGATGGCTGAGGGTTGCAGCCATGCTCCCGGGAAAAACTGTCTATGATGTGATCAAACAGTACAGGGAATTGGAAGAAGATGTTAGTGAAATAGAAGCAGGGAGGATTCCAGTTCCTGGATATCTTACCTCTTGTTTCTCATTGGAGATGGTTGACAACCAATGTTATGATGCATGCAGAAAGAAGCCTGCAACTGTCAGGAGTTCTGATCAGGAGAGGAAGAAAGGGGTCCCTTGGACAGAAGAGGAACACAGACGTTTTTTGATGGGACTTTTAAAGTATGGTAAAGGGGACTGGAGAAATATTTCCCGCAAATTTGTGGTCACAAAGACTCCCACCCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTATCTGGAGGGAAAGACAATAAGAGGAGGCCTAGTATCCATGATATCACCATTATTAATCTTACATCAGACCAAGAGAAGTTCAATGAATCACAGATGCCCTCAGAGAAACTGAAGCTGAAGAGCATGACAAAAGTACAACTTGAATGGATTAATCGCCACAACAATACTGGTTCACTTATGGTTTTCAACCCAAATTATGATATGTTGATGTCACCTTCATCTAGCACCCTATCTCCCAAGACCCTCAAGTTAGGTCAGGATTTCTATGAATGTGCTTTCCATGAGACTTATGCCAAGCTTAAAAATCCAGCTTTCAGGACAGCTTCTAGAGACTTCAACAAGGAAGCTATTTTTGGTATTCATGCACTGTAA | 900 | 0.4156 | MELETPYPSCFMSNSNWFVQESDYTEWTTEENKKFESALAIYDKDTPDRWLRVAAMLPGKTVYDVIKQYRELEEDVSEIEAGRIPVPGYLTSCFSLEMVDNQCYDACRKKPATVRSSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRKFVVTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITIINLTSDQEKFNESQMPSEKLKLKSMTKVQLEWINRHNNTGSLMVFNPNYDMLMSPSSSTLSPKTLKLGQDFYECAFHETYAKLKNPAFRTASRDFNKEAIFGIHAL | 299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g02744 | 299 | CDD | SANT | 26 | 72 | IPR001005 | - | |
| Phco2g02744 | 299 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 22 | 242 | IPR043363 | - | |
| Phco2g02744 | 299 | SUPERFAMILY | Homeodomain-like | 121 | 175 | IPR009057 | - | |
| Phco2g02744 | 299 | Gene3D | - | 125 | 176 | - | - | |
| Phco2g02744 | 299 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 119 | 175 | IPR017930 | - | |
| Phco2g02744 | 299 | ProSiteProfiles | SANT domain profile. | 127 | 175 | IPR017884 | - | |
| Phco2g02744 | 299 | FunFam | transcription factor MYB1R1 | 125 | 176 | - | - | |
| Phco2g02744 | 299 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 122 | 174 | IPR006447 | GO:0003677 | |
| Phco2g02744 | 299 | ProSiteProfiles | Myb-like domain profile. | 119 | 171 | IPR001005 | - | |
| Phco2g02744 | 299 | Gene3D | - | 19 | 86 | - | - | |
| Phco2g02744 | 299 | CDD | SANT | 126 | 170 | IPR001005 | - | |
| Phco2g02744 | 299 | SMART | sant | 23 | 75 | IPR001005 | - | |
| Phco2g02744 | 299 | SMART | sant | 123 | 173 | IPR001005 | - | |
| Phco2g02744 | 299 | Pfam | Myb-like DNA-binding domain | 126 | 170 | IPR001005 | - | |
| Phco2g02744 | 299 | Pfam | Myb-like DNA-binding domain | 26 | 71 | IPR001005 | - | |
| Phco2g02744 | 299 | SUPERFAMILY | Homeodomain-like | 26 | 79 | IPR009057 | - | |
| Phco2g02744 | 299 | FunFam | Transcription factor SRM1 | 19 | 86 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco2g02744 | Phco-Chr2 | 56925166 | 56926655 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Phco2g02744 | Myb_DNA-binding | 7.3e-11 | CL0123 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco2g02744 | 2 | 56925166 | 56926655 | Phco3g00708 | 3 | 5767315 | 5768978 | ECH | |
| Phco2g02744 | 2 | 56925166 | 56926655 | Phco2g02744 | 2 | 56925166 | 56926655 | ECH | |
| Phco2g02744 | 2 | 56925166 | 56926655 | Phco3g00708 | 3 | 5767315 | 5768978 | PCT |