Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02714 ATGGCTCCTCCCTCAGATATCAACCATCTTTCTCACCCTTGCATATACGGGGACTTTGTTTCTTCGTACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCCAATAGAGGAAGGGGTGGTGGTCGTCATCTACAACAACCTGAAGAGGAAGACATGGCTTGGCCAGCTCCAGCTAGATCAATGGATGACCGTGCAAGATCTCGGAAAGAGAAAGAAGAGTTGGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACGGGGTATAAATGGCGAACAGGAGCAAGAATTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCATCTGCTCATCCTCCATATGCCCCTGTACCCGCTTATCCCCATGGATATGGTACGGCATCGCATAGCAGAATATGTGGAGGGTGCAACCAAGAGATCTATGGCGATTGTTTGGGAGTCGGTCAGAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTTGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCATAAGTCCTGTTTTAAAGAATTGACCCACCCTAGATGCGAAGTTTGCTATCAATTTATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAATATGATAATACATCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCTCGGAATGAAAGATACTATAGATTAGAAGATGGAAGGATTTTATGCTTTGAGTGCATGGAATCTGCTATAATTGACACTGGTGAATGTCAGCCTCTTTATCATGCTATCAGAGACTATTACGAAGGAATGAATATGAGAATAGATCAACAAATCCCAATGCTTCTTGTTGAGAGACAAGCACTTAATGATGCCATTGTTGGAGAGAAGAATGGTTTCCATCACCTACCAGAAACTAGGGGCTTATGCCTTTCAGAAGAGCAAACTGTCACAAGCGTGCAAAGACGGCCAAGAATTGGTGGTCATAGATTAATAGGGATGAGATCTCAACCTCAAAAGCTGCTTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTGTATGGCCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTGAAAGGTTACCGAAACCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTCTCTTACATGTGGCTTGAGTCAGAGGTGATGTCATGTGCTAGAACCATGCCATCAACATCATCAGCTTCTTCCTCCTCCTCATCCTCCCACTCATCAAAGAAAGGTGCAAAATCTCACGTTGAACATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTCAGAGCGGCTAATGGAGCTGTGAATAAATATGGTTTACGTTGCACTCTGGACCATATTCGTTTGACTGGTAATTTCCCATTTTGA 1533 0.4292 MAPPSDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKIGSNRGRGGGRHLQQPEEEDMAWPAPARSMDDRARSRKEKEELDHAIALSLGENFKRPTGYKWRTGARIDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGTASHSRICGGCNQEIYGDCLGVGQSYFHPDCFRCHSCCYPITEREFSLSGKHPYHKSCFKELTHPRCEVCYQFIPINAAGLIEYRCHPYWNQKYCPSHEYDNTSRCCSCERLESRNERYYRLEDGRILCFECMESAIIDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVQRRPRIGGHRLIGMRSQPQKLLRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLSPEVEEGICQVLSYMWLESEVMSCARTMPSTSSASSSSSSSHSSKKGAKSHVEHKLGEFFMNQIANDSSPAYGGGFRAANGAVNKYGLRCTLDHIRLTGNFPF 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02714 510 Pfam LIM domain 147 199 IPR001781 -
Phco2g02714 510 Pfam Protein DA1 295 505 IPR022087 -
Phco2g02714 510 MobiDBLite consensus disorder prediction 435 455 - -
Phco2g02714 510 CDD LIM_DA1 147 198 - -
Phco2g02714 510 ProSiteProfiles LIM domain profile. 145 204 IPR001781 -
Phco2g02714 510 Gene3D Cysteine Rich Protein 140 203 - -
Phco2g02714 510 MobiDBLite consensus disorder prediction 435 452 - -
Phco2g02714 510 MobiDBLite consensus disorder prediction 50 80 - -
Phco2g02714 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 144 171 - -
Phco2g02714 510 PANTHER PROTEIN DA1-RELATED 2 33 509 IPR045218 -
Phco2g02714 510 MobiDBLite consensus disorder prediction 44 80 - -
Phco2g02714 510 SMART lim_4 146 197 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02714 Phco-Chr2 56674272 56679991 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco2g02714 DA1-like 3.5e-100 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02714 2 56674272 56679991 Phco2g02714 2 56674272 56679991 ECH
Phco2g02714 2 56674272 56679991 Phco3g00667 3 5365802 5370233 PCT