Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02668 ATGGCTATCAGCCAAAGTGTACTATGCTTCATCACTTTCACTTGTTTCATGCACATAACAAAACCTTCAAACTTGAACACAGACCAGTTACTACAGGGTCATGAGTTCACAACAAGTGATCGTTTGATTTCACCTACAGGTTGGTATACAATGAGTTTCTTTCAGTATGAAGGCTCTGAAGATTTCTACCTTGGAATTAGAAAATCAGCTGAAACTTCAACTAATCGGAATTTCTGGATTGCTAATAGAAACATGCCACTCCACGACCCTGCAACGATTCTCATAATTGATGAAATTGGTAACTTGAAAATTATTTCCAACCGGGAAAGAAATTCCAGTATCATGCTCTATTCTTCTGATGCTGGAAGAGAAGTTAACAGCAATACTACCTTCAACGCCATATTGCAAGATACTGGCAACCTCATGTTCCGTGAAATGAACCAAAATGGATCTTTGAAGAGGACATTATGGCAAAGCTTTGATCATCTCTCACACGTTCTTATGGGGGGGATGAAACTTGGGTTTAATAGAAAAACAGGTCAAAATTGGTCTATTACATCACGGAGAAGTGAAAAGACTTACTCGTCAGGGTCTTTCACCCTTGGCCTTGAGCCCAAAACGAAGCAATTGGTGATGTGGTGGCGGGGGAACATTTTTTGGAGTAGTGGGCAATGGAGCAATGGAAGCTTTGCCAATCTAAACTCCCCACTTTATCACAAGGACTTCGAATTCAATTACTACTCAGATGAAAATGAAACCTATGTGTCATATCTTGCTGGTTATATCGACTTAGAACCTTCAGGTTCAATGTATGGCAACGTCGCTGAGGCTTCTTACTCATGCGTCAATGACTACTTTCTATCTGGTTGTTCAATGCCAAGTGTTCCCAAGTGTAGAGATCATGATAGTTTGTACCGAGGTAGCAGGAATAGCTATGGAGTAATGTCAGGGACGAGTTTCAAATTTGATGAAAGTGAGAACCTGACAAGTTTTGATTGTTGGATGAAGTGCTTGAATAATTGCAGTTGTGAGGCTTACTCTTACGTTAACGAGGATGAAACTGGCTGTGAGATATGGAGCAGAGACTCAGCAAACTTTGTGGCCACTACTAATTTGACTGCTGGAGGGCGTCAGATATACTTCCTTGTTGGTAGAAAAAAAGGCAAGACTAAGATATGGATCATAAGCACGATAGTTGGAACTATCGTCCTAATCATCTTATGCTTCACATGCAATAAGTTGCGGAAAAAATTAAAACTAAAAGCTGAAGATCGCAAGAAACGAACCAAATTATTGTCTGAAATCGGAGGAAATACTACAATTCCCATTGCTTACAATGAAAGAAACGAACAAAAGAAAAATGGAAAGAGCAGTGATGATATGCATATTTTCGATTTCCAAATTATTCTTGAGGCAACTGCTAATTTTTCTTCCACCAATAAAATAGGAGAGGGAGGTTTTGGACCTGTCTACAAGGGAAAGTTGTCAAGTGGACAAGAAGTAGCCATCAAGAGACTTTCCAAAAGCTCAGGACAAGGGTTGATAGAGTTTAAAAATGAAGCAATTCTAATTGTCAAACTCCAACACACCAATTTAGTGAGGCTGCTTGGTTTTTGCATTGACAAAGAAGAAAGGATATTAGTTTACAAGTACCTCCCTAACAAAAGTTTGAATTTGTACCTTTTTGAATTCGAAGAACGAACTAAAAGAATTGTTGGAACATTTGGTTATATGTCTCCAGAATATGCTATGATGGGTGTTATCTCAACTAAACTAGACGTTTACAGTTTTGGCATCCTTTTGTTAGAGATTCTAAGTGGAAAGAAGAATAACATTGATTATCCATTTAATCTTGTTTTTAATGCATGGAAATTATGGAATGAAGGTGAAGCTCTAAAGTTAATGGACAAGAACATGAATGGATCATACTCCCCTACCCAAATGTTACGATACATTCATATTGGTCTCTTGTGCACACAAGATCAAGCAAGAGACAGACCCACTATGCTTGAGGTTGTTTCTTTTCTTTCAAATGAAATTGCTCATTTACCTAAACCTAAACAACCAGGATTTTGTGTCATTGGAGGAGTGGAAGATAGAGAATTGCGCTATAGTTGTTCCATAAAGGAGACAACAAATTCATGCTCATCAGGCAGATAA 2160 0.3838 MAISQSVLCFITFTCFMHITKPSNLNTDQLLQGHEFTTSDRLISPTGWYTMSFFQYEGSEDFYLGIRKSAETSTNRNFWIANRNMPLHDPATILIIDEIGNLKIISNRERNSSIMLYSSDAGREVNSNTTFNAILQDTGNLMFREMNQNGSLKRTLWQSFDHLSHVLMGGMKLGFNRKTGQNWSITSRRSEKTYSSGSFTLGLEPKTKQLVMWWRGNIFWSSGQWSNGSFANLNSPLYHKDFEFNYYSDENETYVSYLAGYIDLEPSGSMYGNVAEASYSCVNDYFLSGCSMPSVPKCRDHDSLYRGSRNSYGVMSGTSFKFDESENLTSFDCWMKCLNNCSCEAYSYVNEDETGCEIWSRDSANFVATTNLTAGGRQIYFLVGRKKGKTKIWIISTIVGTIVLIILCFTCNKLRKKLKLKAEDRKKRTKLLSEIGGNTTIPIAYNERNEQKKNGKSSDDMHIFDFQIILEATANFSSTNKIGEGGFGPVYKGKLSSGQEVAIKRLSKSSGQGLIEFKNEAILIVKLQHTNLVRLLGFCIDKEERILVYKYLPNKSLNLYLFEFEERTKRIVGTFGYMSPEYAMMGVISTKLDVYSFGILLLEILSGKKNNIDYPFNLVFNAWKLWNEGEALKLMDKNMNGSYSPTQMLRYIHIGLLCTQDQARDRPTMLEVVSFLSNEIAHLPKPKQPGFCVIGGVEDRELRYSCSIKETTNSCSSGR 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02668 719 ProSiteProfiles PAN/Apple domain profile. 298 385 IPR003609 -
Phco2g02668 719 Pfam D-mannose binding lectin 78 189 IPR001480 -
Phco2g02668 719 SUPERFAMILY Protein kinase-like (PK-like) 458 691 IPR011009 -
Phco2g02668 719 Pfam Protein tyrosine and serine/threonine kinase 575 676 IPR001245 GO:0004672|GO:0006468
Phco2g02668 719 Pfam Protein tyrosine and serine/threonine kinase 479 563 IPR001245 GO:0004672|GO:0006468
Phco2g02668 719 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 226 IPR036426 -
Phco2g02668 719 Pfam PAN-like domain 326 362 IPR003609 -
Phco2g02668 719 ProSiteProfiles Bulb-type lectin domain profile. 27 156 IPR001480 -
Phco2g02668 719 ProSiteProfiles Protein kinase domain profile. 476 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02668 719 Gene3D Transferase(Phosphotransferase) domain 1 550 685 - -
Phco2g02668 719 Gene3D Phosphorylase Kinase; domain 1 439 549 - -
Phco2g02668 719 SMART ntp_6 307 384 IPR003609 -
Phco2g02668 719 PIRSF SRK 1 279 IPR024171 GO:0004674
Phco2g02668 719 PIRSF SRK 563 719 IPR024171 GO:0004674
Phco2g02668 719 PIRSF SRK 270 569 IPR024171 GO:0004674
Phco2g02668 719 Gene3D - 23 161 IPR036426 -
Phco2g02668 719 SMART blect_4 33 163 IPR001480 -
Phco2g02668 719 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 132 562 - -
Phco2g02668 719 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 442 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02668 Phco-Chr2 56332719 56336093 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco2g02668 B_lectin 3.5e-22 No_clan