Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02652 ATGGCACTGGCCAAAGACCAAAAAATTCCACATAATTCAAGCATGAGCAGCAAGGTTCCAAACTGTGTTTTCAATGAGACTGTGGAGACTACCTCCGTCACTGTTCATAGAGTCAATGACTACCACAAATCGGTTTTAGAAGAGGAAGATGGCTCCCAAACTACGCATGGTCTCAGCAATGATTCTGGTATAACGCATTCTCCTCCTCTGTCTGGTAGTGACAAAGGGTATACTTATAAGGACACAAATTACCAGCCTGATGAAGAAGAATCGCTGATTAATTTCAAAGGGTACAGTAATCTCATGCAAGCTGGTGAATCTTTGCTTAGCTTTCAGCACAACAGGTTGGTCCCTAACAACTGTTATTTGAAAGATAATATTCAGAAAGAGTACTGTGTTTGGGAGAATAATTTGCATCAAAGCCATAACCATTGGAATCAGACTAGTCCAAGAAGCACTAAAGACATGCGCCTAGTGCAGGATTTCAATTGCTTTCAAACTGCTAGTGGCTATAGCTCCATAGTCGATAATGCAAAAGAGAATCAATATGGAGAAGGTTCATCAGGGTGGCTCTACTCAGCACCAACTATCCCTAATCATAGGAGCCTCCACGAGTTAGGAGCACGAGAGGTTGTGTTGCAAAAGCGCCCTTCAATGGGAGAAAGCATAAAAGCCGCCAAGAAGCAATGCTCAACTGGGAGCAAAACGCCAAAACATAAGTCAAGCCCATCCAAGGATCCTCAAAGTGTGGCCGCCAAGAATCGAAGAGAGAGGATAAGCGAACGATTGAAGATACTACAAGAACTAGTGCCCAACGGCTCCAAGGTTGATATGGTTACTATGCTGGAGAAAGCAATTAGCTATGTAAAGTTTCTTCAACTTCAAGTGAAAGTTTTGGCAACTGATGAATTTTGGCCTGCGCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGTCATCGATGTCATTCGTTCATCACAAAGAGAGAGAAGTTTAAACTGA 1008 0.4256 MALAKDQKIPHNSSMSSKVPNCVFNETVETTSVTVHRVNDYHKSVLEEEDGSQTTHGLSNDSGITHSPPLSGSDKGYTYKDTNYQPDEEESLINFKGYSNLMQAGESLLSFQHNRLVPNNCYLKDNIQKEYCVWENNLHQSHNHWNQTSPRSTKDMRLVQDFNCFQTASGYSSIVDNAKENQYGEGSSGWLYSAPTIPNHRSLHELGAREVVLQKRPSMGESIKAAKKQCSTGSKTPKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLATDEFWPAQGGKPPDISQVKEVIDVIRSSQRERSLN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02652 335 MobiDBLite consensus disorder prediction 225 249 - -
Phco2g02652 335 Gene3D - 238 300 IPR036638 GO:0046983
Phco2g02652 335 MobiDBLite consensus disorder prediction 46 83 - -
Phco2g02652 335 MobiDBLite consensus disorder prediction 51 80 - -
Phco2g02652 335 Pfam Helix-loop-helix DNA-binding domain 253 293 IPR011598 GO:0046983
Phco2g02652 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Phco2g02652 335 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 110 301 IPR045843 GO:0003700|GO:0006355
Phco2g02652 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 303 IPR036638 GO:0046983
Phco2g02652 335 MobiDBLite consensus disorder prediction 218 256 - -
Phco2g02652 335 FunFam Transcription factor bHLH83 241 300 - -
Phco2g02652 335 CDD bHLH_AtIND_like 244 306 - -
Phco2g02652 335 SMART finulus 249 298 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02652 Phco-Chr2 56190416 56191967 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g02652 HLH 7.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02652 2 56190416 56191967 Phco2g02652 2 56190416 56191967 ECH
Phco2g02652 2 56190416 56191967 Phco3g00603 3 4863206 4864542 PCT