Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02621 ATGCCTCTCTACCTTGAGGAAAAAATAATAACTTTATTGAGGAAGCAATTGCCTTTTGTTGAGTGGGCTATTAACGGGCCTTCTCGAATTTCAAGATTGGAATCGGAAGTCCTCAAAGTAGTTTTCATTCATTTTCAACCATTTATTAGTTTCGGGTCGGGTAAAACCAAACCGAGTACCGGACCACTACACCCACCCAAATCTGCAAACCATTTCCTTCTTCACCAACAAACTCACTCACATCGCAGCTTCAAAAACCGAAGATTCCTTCAACGATCTGCGACCCTCGCGTGTTGCATCCCCATCTCCCACTCCAAGCAAAGCCATTATCTATCGAAGCAAAGAGAAAGCGAATCAGAAAATAAGAAAGAGAGAATGGGGTTTGGTTTGTTAGCTTCGAAGGCCCTCAGACCCACCTCCAGGTTCCTCCTCTCTTCCCAAAACCCCACCATCTTCCTCCGAACCATTGTCTCCAAGCCTCAGCTTCGCAATCCCGAGGCCTCCGCCGCGCAGCCGGAGCAGCCGCCGCCCGCCGATCTTCCGCCGCGAACTCCGCTCGCCGGCGCGCGCGTTCACTTCGCGAACCCCGACGATGCCATCGAGGTCTTCGTGGACGGTTACCCCGTCAAAATCCCCAAGGGAATGACCGTTCTCCAGGCCTGCGAGGTCGCCGGCGTCGACATCCCGCGGTTCTGCTACCATAGCAGACTCTCCATCGCTGGCAATTGTCGCATGTGCCTCGTCGAGGTCGAGAAATCGCCCAAACCTGTCGCCTCTTGCGCCATGCCCGCTCTTCCTGGGATGAAAATTAAGACTGACACACCTGTGGCAAAGAAGGCTCGAGAGGGGGTGATGGAGTTTTTATTGATGAATCATCCATTAGATTGCCCAATTTGTGATCAGGGTGGGGAATGTGATCTTCAGGATCAGTCTATGGCATTTGGCTCTGATCGTGGGCGGTTTACTGAAGTGAAGAGATCTGTGGTAGATAAAAATCTTGGACCTCTGGTGAAGACTGTGATGACTCGGTGCATTCAATGTACAAGGTGTGTTAGATTTGCAACTGAGGTCGCCGGGGTTCAGGATCTTGGAATGTTAGGTCGTGGCAGTGGAGAAGAGATTGGGACATATGTTGAAAAACTTTTGACAAGTGAGCTTTCTGGAAATGTCATAGATATCTGTCCTGTGGGGGCTCTCACTTCAAAACCGTTTGCATTTAAAGCCCGAAACTGGGAGTTGAAGGGCACTGAGACCATTGATGTTACTGATGCTGTTGGCTCCAATATTCGAATTGATAGCAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAATGAGGATATAAATGAAGAATGGATTTCAGACAAAACTCGTTTTTGTTATGATGGTTTGAAAAGGCAGAGGTTAAATGACCCCATGATTCGTGGTCCGGATGGACGATTTAAGGCTGTTAACTGGCGTGATGCCCTTGCTATGGTAGCAGAGATTGCCCACCAAGTTAAACCAGAAGAAATTGTTGGAGTAGCTGGGAAACTTTCTGATGCTGAGTCCATGATTGCCCTAAAAGATTTCTTAAATAGGATGGGGTCAAATGATGTATGGGGTGAAGGCATTGGTGTAAATACTAATGCTGATTTCAGATCAGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCAGATGTGTTCCTATTGGTTGGTACCCAGCCACGGGTAGAAGCTGCTATGGTTAATGCCAGAATACGCAAGACTGTCAGATCAAACCAAGCCAAAGTTGGGTACATTGGGCCTGCTACTGATTTCAACTATGACCACAAACATCTTGGTACTGACCCTCAAACACTTGTTGAAATTGCTGAGGGTCACCACCCATTTTTCAAGACACTTTCAGATGCCAAAAACCCTGTTATCATTGTTGGTGCTGGGGTTTTTGAGAGGAACGACCAGGATGCAATTTTTGCCGCTGTTGAAACCATTGCACAAAAGGCAAATGTTGTCAGACCTGACTGGAATGGCCTTAATGTATTGCTTCTCCATGCAGCCCAGGCTGCTGCACTTGACCTTGGACTTGTTCCGCAATCTGAGAAAAGCCTCGAGTCTGCAAAATTTGTATTTTTGATGGGTGCTGATGATGTGAACTTAGACAAGATCCCAGATGATGCTTTTGTTGTTTATCAAGGTCACCATGGTGACAAGAGTGTTTACCGTGCAAATGTTATTTTGCCAACGGCAGCATTCAGTGAGAAGGAAGGAACCTATCAAAATACCGAAGGGTGCGCACAACAAACGTTGCCTGCAGTTCCAACAGTTGGTGACTCTAGAGATGATTGGAAAATAATTCGAGCTCTGTCTGAGGTGGCAGGAGTGCGTTTGCCCTATGATACAATTGGGGCTATTCGTGCCCGAATCAGGAATGTAGCCCCAAACCTTGTCAACGTGGATGAGAGAGAACCAGCCACATTGCCATCTTCACTCAGACCAACCTTCACTGAGAAGGTAGACACAACTCCATTCGGGACTGTAGTTGAAAATTTCTATATGACTGACGCCATTACCAGGGCATCAAAGATAATGGCACAATGCAGTGCTATGCTTTTGAAGAAGTGA 2616 0.4702 MPLYLEEKIITLLRKQLPFVEWAINGPSRISRLESEVLKVVFIHFQPFISFGSGKTKPSTGPLHPPKSANHFLLHQQTHSHRSFKNRRFLQRSATLACCIPISHSKQSHYLSKQRESESENKKERMGFGLLASKALRPTSRFLLSSQNPTIFLRTIVSKPQLRNPEASAAQPEQPPPADLPPRTPLAGARVHFANPDDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEVKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLLTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRIVPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGPDGRFKAVNWRDALAMVAEIAHQVKPEEIVGVAGKLSDAESMIALKDFLNRMGSNDVWGEGIGVNTNADFRSGYIMNTSIAGLEKADVFLLVGTQPRVEAAMVNARIRKTVRSNQAKVGYIGPATDFNYDHKHLGTDPQTLVEIAEGHHPFFKTLSDAKNPVIIVGAGVFERNDQDAIFAAVETIAQKANVVRPDWNGLNVLLLHAAQAAALDLGLVPQSEKSLESAKFVFLMGADDVNLDKIPDDAFVVYQGHHGDKSVYRANVILPTAAFSEKEGTYQNTEGCAQQTLPAVPTVGDSRDDWKIIRALSEVAGVRLPYDTIGAIRARIRNVAPNLVNVDEREPATLPSSLRPTFTEKVDTTPFGTVVENFYMTDAITRASKIMAQCSAMLLKK 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02621 871 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 296 308 IPR000283 GO:0008137|GO:0016020|GO:0042773
Phco2g02621 871 FunFam NADH-ubiquinone oxidoreductase 75 kDa subunit 325 402 - -
Phco2g02621 871 CDD MopB_Res-Cmplx1_Nad11 417 790 - -
Phco2g02621 871 MobiDBLite consensus disorder prediction 163 187 - -
Phco2g02621 871 Pfam 2Fe-2S iron-sulfur cluster binding domain 198 275 - -
Phco2g02621 871 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 229 246 IPR000283 GO:0008137|GO:0016020|GO:0042773
Phco2g02621 871 FunFam NADH-quinone oxidoreductase subunit G 199 321 - -
Phco2g02621 871 ProSiteProfiles His(Cys)3-ligated-type [4Fe-4S] domain profile. 276 315 IPR019574 GO:0016491
Phco2g02621 871 PANTHER RESPIRATORY NITRATE REDUCTASE 269 866 - -
Phco2g02621 871 FunFam NADH-quinone oxidoreductase 478 539 - -
Phco2g02621 871 FunFam NADH-ubiquinone oxidoreductase 75 kDa subunit 404 519 - -
Phco2g02621 871 SUPERFAMILY Formate dehydrogenase/DMSO reductase, domains 1-3 411 818 - -
Phco2g02621 871 CDD fer2 200 271 IPR001041 GO:0051536
Phco2g02621 871 Pfam NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 281 318 IPR019574 GO:0016491
Phco2g02621 871 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 198 276 IPR001041 GO:0051536
Phco2g02621 871 FunFam NADH dehydrogenase [ubiquinone] iron-sulfur protein 1 mitochondrial 696 821 - -
Phco2g02621 871 Gene3D - 199 321 - -
Phco2g02621 871 NCBIfam NADH-quinone oxidoreductase subunit NuoG 202 786 IPR010228 GO:0016651|GO:0051536
Phco2g02621 871 ProSiteProfiles Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile. 413 469 IPR006963 GO:0016491
Phco2g02621 871 Gene3D - 325 402 - -
Phco2g02621 871 SMART NADH_G_4Fe_4S_3_2 281 321 IPR019574 GO:0016491
Phco2g02621 871 SUPERFAMILY 2Fe-2S ferredoxin-like 200 272 IPR036010 GO:0051536
Phco2g02621 871 SUPERFAMILY 4Fe-4S ferredoxins 273 409 - -
Phco2g02621 871 Pfam Molybdopterin oxidoreductase 469 788 IPR006656 GO:0016491
Phco2g02621 871 Gene3D - 714 821 - -
Phco2g02621 871 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 343 353 IPR000283 GO:0008137|GO:0016020|GO:0042773
Phco2g02621 871 Gene3D - 404 520 - -
Phco2g02621 871 Pfam NADH-ubiquinone oxidoreductase subunit G, C-terminal 834 864 IPR015405 GO:0016651|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02621 Phco-Chr2 55908942 55916909 Proximal