Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02617 ATGACTAGAAAAAAGGTGAAGTTGGCATTCATAGCCAATGACTCAGCTAGGAAGGCAACGTTCAAGAAGAGGAAGAAGGGTCTAATGAAGAAGGTGAGTGAACTTAGCACCCTCTGTGGGATTGATGCATGTGCTATAGTTTATAGTCCTTATGATCCTCAACCTGAGGTTTGGCCATCCCCAATGGGGGTCCAAAGGGTGCTTGCCAAGTTCAGGAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGAATTCTAAAGGCCAAAGACCAGTTGAAGAAACAAAGGAAGGATAATAGGGAAAAAGAGATGACTCAGCTCATGTTTCAGTACCTTAGTGCTGGTAAAATTATGCACAATATAAGCATGGTTGATTTGAATGATCTGGCATGGTTGATTGATCAAAATTTGAAGGACATCAACAGGAGGATTGAGGTGTTGACTAAGAATGCTCAGAGTCAAACCCAAGTTGCAGCACCAGCGGTGACTGATGTTGTTGCCAAGATTGAAGACAAGGGACAAGGGAGTCATAATGGTCAGGGATTTGACATCAACATGGATCTCATGCACAAGCAGAACTGGTTTATGAATTTGATGAATAGTGGTGTTGGTGGTGGGAATGAGACTATGCCTTTTGGAGATGTTAATCACCAAAATGGCTTTTGGCCAAACCCATTTTTCCATTGA 714 0.4272 MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRILKAKDQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNAQSQTQVAAPAVTDVVAKIEDKGQGSHNGQGFDINMDLMHKQNWFMNLMNSGVGGGNETMPFGDVNHQNGFWPNPFFH 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02617 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco2g02617 237 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Phco2g02617 237 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Phco2g02617 237 Coils Coil 91 114 - -
Phco2g02617 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Phco2g02617 237 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Phco2g02617 237 PANTHER MADS BOX PROTEIN 3 138 - -
Phco2g02617 237 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Phco2g02617 237 Coils Coil 146 166 - -
Phco2g02617 237 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phco2g02617 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco2g02617 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02617 Phco-Chr2 55892130 55892843 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco2g02617 SRF-TF 3.9e-19 No_clan