Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02592 ATGGATCTGAAGGAATGGTCGTCTTCGGAGCTGAACGAAAACAAGAAATGCTGCGCTGATTGCAAAACCACCAAGACCCCACTGTGGAGAGGAGGACCAGCTGGACCCAAGACTCTGTGCAACGCCTGCGGAATCCGGTACCGGAAGAGAGGGAGTTGTTCCAGAAAGAGAGAGGAGGTGGTGGTGTTGCACCGGACATCCTCTGTTGTTAAGAAACAGAGCTGGAAGATGTTGGGAGAAGAGGAACAGGCGGCTGTGTGTTTGATGGCCTTGTCCTGTGGTTTTTTACCATTCCTTCACTTGCCACATTCCAGTGTTCATGTTAGGGCCTAG 333 0.5165 MDLKEWSSSELNENKKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRGSCSRKREEVVVLHRTSSVVKKQSWKMLGEEEQAAVCLMALSCGFLPFLHLPHSSVHVRA 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02592 110 PANTHER OS01G0976800 PROTEIN 7 51 - -
Phco2g02592 110 CDD ZnF_GATA 18 53 IPR000679 GO:0006355|GO:0043565
Phco2g02592 110 ProSitePatterns GATA-type zinc finger domain. 18 43 IPR000679 GO:0006355|GO:0043565
Phco2g02592 110 Gene3D - 12 77 IPR013088 GO:0006355|GO:0008270
Phco2g02592 110 SMART GATA_3 12 63 IPR000679 GO:0006355|GO:0043565
Phco2g02592 110 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 52 - -
Phco2g02592 110 ProSiteProfiles GATA-type zinc finger domain profile. 12 51 IPR000679 GO:0006355|GO:0043565
Phco2g02592 110 Pfam GATA zinc finger 18 52 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02592 Phco-Chr2 55721996 55722499 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco2g02592 GATA 4.9e-17 CL0167