Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02573 ATGGAAGCACTTTACAGGTTCAAACCTCTTCTGCCTTCTCTCCAGGATATGCGTCTCGGAACAACACCTAATTCTTACCTCCAGCTAGAAGCACCTCAACCCAACGTAACCCACTCAGATATGACGGATCGGATCATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATACATAGAATGCCAAAAGGTTGGAGCGCCGCCGGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCTTCAGAAAGGGGACGGTCCTGAACTTGACCACTTCATGGAAATGTACTGCGATTTGCTTCGTAGACACAAGGAGGAGTTGTCCAGACCCTTCAATGAAGCGACTTTGTTTCTGGGAAACATGGAATCACAACTAAGCAACCTTTGTAATGGAACACTGATAAAGTCATCAGATAACAACCACTCCGATGAAGTAGCTGGTGGAGCATCAGAGGAAGAAATAAGTTGTGGAGAGATGGAAGAAGTTGAAGGTGATCAAAATCTTAAAGAGATGCTCCTTCGCAAGTACAGTGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAAGACGGCACTCATGAACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTAACAGAAGTGACTGGACTGGATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAACTGAGGACATGCGATTTGCCGTTATGGATGGGTTAAGTGGCGGCGGTGGCATCATAGGAGGAGCTATGTTCTTTTAG 864 0.4549 MEALYRFKPLLPSLQDMRLGTTPNSYLQLEAPQPNVTHSDMTDRIIKIQIANHPLYPDLLSAYIECQKVGAPPELACLLEEIGRESHRMNARLQKGDGPELDHFMEMYCDLLRRHKEELSRPFNEATLFLGNMESQLSNLCNGTLIKSSDNNHSDEVAGGASEEEISCGEMEEVEGDQNLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDAKTALMNWWNTHHRWPYPTEEEKVKLTEVTGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGLSGGGGIIGGAMFF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02573 287 SMART KNOX2_2 91 142 IPR005541 GO:0003677|GO:0005634
Phco2g02573 287 ProSiteProfiles ELK domain profile. 179 199 IPR005539 GO:0003677
Phco2g02573 287 SMART ELK_2 179 200 IPR005539 GO:0003677
Phco2g02573 287 Pfam Homeobox KN domain 219 258 IPR008422 GO:0003677|GO:0006355
Phco2g02573 287 Pfam KNOX1 domain 46 87 IPR005540 GO:0003677|GO:0005634
Phco2g02573 287 Gene3D - 197 270 - -
Phco2g02573 287 SUPERFAMILY Homeodomain-like 201 274 IPR009057 -
Phco2g02573 287 ProSiteProfiles 'Homeobox' domain profile. 199 262 IPR001356 GO:0003677
Phco2g02573 287 CDD homeodomain 202 262 IPR001356 GO:0003677
Phco2g02573 287 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 269 - -
Phco2g02573 287 Pfam ELK domain 180 200 IPR005539 GO:0003677
Phco2g02573 287 Pfam KNOX2 domain 96 141 IPR005541 GO:0003677|GO:0005634
Phco2g02573 287 SMART HOX_1 201 266 IPR001356 GO:0003677
Phco2g02573 287 SMART KNOX1_2 44 88 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02573 Phco-Chr2 55563773 55568423 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco2g02573 KNOX2 5.4e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02573 2 55563773 55568423 Phco2g02573 2 55563773 55568423 ECH
Phco2g02573 2 55563773 55568423 Phco6g01284 6 12886971 12891522 PCT